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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaatgtttttggtactagtttggttgtcatatcagccacagagatataacgtctatcatctatatgcctcagGTTCTCGCATTGTGTGACCACGCAAGTCTTTTGGATGAGTCTGAAACCCATGGTTTGTTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G72330.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054017|gb|DR349774.1|DR349774
EST:     TTGGGAATCCTCAATCTCTTGGTCAGCTGCCTATAAAGTTCTTCCGTGAG                         GTTCTCGCATTGTGTGACCACGCAAGTCTTTTGGATGAGTCTGAAACCCAT
genomic: TTGGGAATCCTCAATCTCTTGGTCAGCTGCCTATAAAGTTCTTCCGTGAGgtaagtgaat ... tatgcctcagGTTCTCGCATTGTGTGACCACGCAAGTCTTTTGGATGAGTCTGAAACCCAT
EST: gi|86054013|gb|DR349770.1|DR349770
EST:     TTGGGAATCCTCAATCTCTTGGTCAGCTGCCTATAAAGTTCTTCCGTGAG                         GTTCTCGCATTGTGTGACCACGCAAGTCTTTTGGATGAGTCTGAAACCCAT
genomic: TTGGGAATCCTCAATCTCTTGGTCAGCTGCCTATAAAGTTCTTCCGTGAGgtaagtgaat ... tatgcctcagGTTCTCGCATTGTGTGACCACGCAAGTCTTTTGGATGAGTCTGAAACCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttggttgtcatatcagccacagagatataacgtctatcatctatatgcctcagGTTCTCGCATTGTGTGACCACGCAAGTCTTTTGGATGAGTCTGAAACCCATGGTTTGTTCAG
                          atataac  putative branch site (score: 3)
                        agatataa  TA-rich tract