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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaacttataaaaaaggaattcctctcctcaatttggttagcaattacacaatcagaaatttaatcaaattttgtgtttcattgttttgaaaaatccactagGAGCTATTTTAGGAGGAATAATCCCTGGAGTTACTACAACAAAGACAGCGATCGCGTGTCCTCTCTATTGCTTACAAGTAGAGTACATGACATGTCCTTC

Basic information

species Arabidopsis thaliana
transcript AT1G72060.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124931815|gb|EL009137.1|EL009137
EST:     GAAAGAAATGGTTACATACAAGATTTGGGTGATGTCTTTCATCATAGCAG                         GAGCTATTTTAGGAGGAA
genomic: GAAAGAAATGGTTACATACAAGATTTGGGTGATGTCTTTCATCATAGCAGgttcaactta ... aatccactagGAGCTATTTTAGGAGGAA
EST: gi|125063994|gb|EL131774.1|EL131774
EST:     GAAAGAAATGGTTACATACAAGATTTGGGTGATGTCTTTCATCATAGCAG                         GAGCTATTTTAGGAGGAA
genomic: GAAAGAAATGGTTACATACAAGATTTGGGTGATGTCTTTCATCATAGCAGgttcaactta ... aatccactagGAGCTATTTTAGGAGGAA
EST: gi|125278518|gb|EL292603.1|EL292603
EST:     TGATGTCTTTCATCATAGCAG                         GAGCTATTTTAGGAGGAATAATCCCTGGGGTTACTA
genomic: TGATGTCTTTCATCATAGCAGgttcaactta ... aatccactagGAGCTATTTTAGGAGGAATAATCCCTGGAGTTACTA
EST: gi|125085901|gb|EL145568.1|EL145568
EST:     GAAAGAAATGGTTACATACAAGATTTGGGTGATGTCTTTCATCATAGCAG                         GAGCTATTTTAGGAGGAA
genomic: GAAAGAAATGGTTACATACAAGATTTGGGTGATGTCTTTCATCATAGCAGgttcaactta ... aatccactagGAGCTATTTTAGGAGGAA
EST: gi|116433223|gb|EG475815.1|EG475815
EST:     GAAAGAAATGGTTACATACAAGATTTGGGTGATGTCTTTCATCATAGCAG                         GAGCTATTTTAGGAGGAATAATCCCTGGAGTTACTACAACAAAGACAGCGA
genomic: GAAAGAAATGGTTACATACAAGATTTGGGTGATGTCTTTCATCATAGCAGgttcaactta ... aatccactagGAGCTATTTTAGGAGGAATAATCCCTGGAGTTACTACAACAAAGACAGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaatcagaaatttaatcaaattttgtgtttcattgttttgaaaaatccactagGAGCTATTTTAGGAGGAATAATCCCTGGAGTTACTACAACAAAGACAGCGATCGCGTGTCCTCTCTATTGCTTACAAGTAGAGTACATGACATGTCCTTC
           atttaat  putative branch site (score: 4)
         aaatttaatcaaattt  TA-rich tract