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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCATTAATAACCTTCGTGCCCTCGTCCAAAAGAAGTGCGGTCAAGTCGTCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacatctatcactttttcgtctataactcaatcacatttagtttcaactaaccttggattatgacttgcggttacatgcaataatacaaaccattagtctacaagtcacactaattctctaacatgataattatttttgtgtgtcaatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G71695.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71695.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os01g73220.1 (Oryza sativa), 5'ss of exon 1
CGTCATTAATAACCTTCGTGCCCTCGTCCAAAAGAAGTGCGGT---CAAGTCGTCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccac----atctatcactttttcgtctataactcaatcacatttagtttcaactaaccttggattatgacttgcggttacatgcaataatacaaaccattagtctacaagtcacactaattctctaacatgataattatttttgtgtgtcaatgtag
   | | ||  || | || | || | |  | |||  ||||||       |||||||| ||||| || ||||||||||||||||| ||||| || ||||||   |||| |      || ||     ||   || |  |      | |      |||     ||| |    |||||   |     |||  |  |||  || | | |                                                            
---CGTCAACGACATCCGCGACCGCCTTGAGAAGGCGTGCGGCGCCTCCGTCGTCTCCTGCTCCGACATCCTCGCTCTCGCCGCCCGCGACTCTGTCGTCGCGgtaaacgtataaatttagagtcttacagtttgcatgatcgtgagggcgtgttgtgtataatcgaaaattatttatactttttaagta-aattttatagaac------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164187719|gb|ES103585.1|ES103585
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCA
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCA
EST: gi|86048096|gb|DR343851.1|DR343851
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|116414392|gb|EG456984.1|EG456984
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCTGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|86048109|gb|DR343864.1|DR343864
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|124749576|gb|EH839706.1|EH839706
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCG
EST: gi|124817059|gb|EH901925.1|EH901925
EST:     CGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: CGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|116456797|gb|EG499389.1|EG499389
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|124743109|gb|EH834271.1|EH834271
EST:     GATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: GATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|86048111|gb|DR343866.1|DR343866
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTNNNNNNCTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|164129343|gb|ES203326.1|ES203326
EST:     CGCCGCTCGCGATTCCGT-GTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: CGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|86056964|gb|DR352721.1|DR352721
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|124814610|gb|EH899476.1|EH899476
EST:     CTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTACTTCTAG
genomic: CTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACT-CT-CTAG
EST: gi|86048118|gb|DR343873.1|DR343873
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGGCCGA
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGG-CCGA
EST: gi|164034237|gb|ES184919.1|ES184919
EST:     CGCCGCTCGCGATTCCGT-GTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTTCTAGC
genomic: CGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCT-CTAGC
EST: gi|124724053|gb|EH815455.1|EH815455
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACG
EST: gi|86048125|gb|DR343880.1|DR343880
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|86048131|gb|DR343886.1|DR343886
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCSGNTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTG
EST: gi|116414639|gb|EG457231.1|EG457231
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG