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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccacatctatcactttttcgtctataactcaatcacatttagtttcaactaaccttggattatgacttgcggttacatgcaataatacaaaccattagtctacaagtcacactaattctctaacatgataattatttttgtgtgtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCGTTCGCGAGCCAGGAAACGACGTTAAATAACTTACCACCACCGTTCTTCA

Basic information

species Arabidopsis thaliana
transcript AT1G71695.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164187719|gb|ES103585.1|ES103585
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCA
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCA
EST: gi|86048096|gb|DR343851.1|DR343851
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|116414392|gb|EG456984.1|EG456984
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCTGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|86048109|gb|DR343864.1|DR343864
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|124749576|gb|EH839706.1|EH839706
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCG
EST: gi|124817059|gb|EH901925.1|EH901925
EST:     CGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: CGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|116456797|gb|EG499389.1|EG499389
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|124743109|gb|EH834271.1|EH834271
EST:     GATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: GATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|86048111|gb|DR343866.1|DR343866
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTNNNNNNCTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|164129343|gb|ES203326.1|ES203326
EST:     CGCCGCTCGCGATTCCGT-GTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: CGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|86056964|gb|DR352721.1|DR352721
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|124814610|gb|EH899476.1|EH899476
EST:     CTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTACTTCTAG
genomic: CTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACT-CT-CTAG
EST: gi|86048118|gb|DR343873.1|DR343873
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGGCCGA
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGG-CCGA
EST: gi|164034237|gb|ES184919.1|ES184919
EST:     CGCCGCTCGCGATTCCGT-GTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTTCTAGC
genomic: CGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCT-CTAGC
EST: gi|124724053|gb|EH815455.1|EH815455
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACG
EST: gi|86048125|gb|DR343880.1|DR343880
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
EST: gi|86048131|gb|DR343886.1|DR343886
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCSGNTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTG
EST: gi|116414639|gb|EG457231.1|EG457231
EST:     TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTA                         TCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG
genomic: TCTCTTGCTCAGATATCCTCGCTCTCGCCGCTCGCGATTCCGTCGTCCTAgtaaccacat ... gtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctacaagtcacactaattctctaacatgataattatttttgtgtgtcaatgtagTCAGGAGGGCCAGACTATGCTGTCCCACTTGGCCGACGTGACTCTCTAGCGTTCGCGAGCCAGGAAACGACGTTAAATAACTTACCACCACCGTTCTTCA
                   ctctaac  putative branch site (score: 2)
              taattctctaacatga  TA-rich tract