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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattattcaacttcttcaatattgtgtatatccaaaaactgaatggatttttttaactttagggttgttttctaaatctgcagAAGAAGAAAGCCAAGAGAGTTTTGATCATATACAAGATGAACCTTTATGCGATTATACGCAAGGGAACTGGGTCAGAGACGAGATTGGTCCACTCTACAA

Basic information

species Arabidopsis thaliana
transcript AT1G70230.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124918115|gb|EH991983.1|EH991983
EST:     AGACTCTGCAGCTAACGTTGTGATCACTAGCTTCTCTTCATCTTCTCAAG                         AAGAAGAAAGCCAAGAG
genomic: AGACTCTGCAGCTAACGTTGTGATCACTAGCTTCTCTTCATCTTCTCAAGgtaattattc ... aaatctgcagAAGAAGAAAGCCAAGAG
EST: gi|116475557|gb|EG518149.1|EG518149
EST:     AGACTCTGCAGCTAACGTTGTGATCACTAGCTTCTCTTCATCTTCTCAAG                         AAGAAGAAAGCCAAGAGAGTTTTGATCATATACAAGATGAACCTTTATGCG
genomic: AGACTCTGCAGCTAACGTTGTGATCACTAGCTTCTCTTCATCTTCTCAAGgtaattattc ... aaatctgcagAAGAAGAAAGCCAAGAGAGTTTTGATCATATACAAGATGAACCTTTATGCG
EST: gi|116475558|gb|EG518150.1|EG518150
EST:     AGACTCTGCAGCTAACGTTGTGATCACTAGCTTCTCTTCATCTTCTCAAG                         AAGAAGAAAGCCAAGAGAGTTTTGATCATATACAAGATGAACCTTTATGCG
genomic: AGACTCTGCAGCTAACGTTGTGATCACTAGCTTCTCTTCATCTTCTCAAGgtaattattc ... aaatctgcagAAGAAGAAAGCCAAGAGAGTTTTGATCATATACAAGATGAACCTTTATGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatccaaaaactgaatggatttttttaactttagggttgttttctaaatctgcagAAGAAGAAAGCCAAGAGAGTTTTGATCATATACAAGATGAACCTTTATGCGATTATACGCAAGGGAACTGGGTCAGAGACGAGATTGGTCCACTCTACAA
                                         ttctaaa  putative branch site (score: 2)
                                       ttttcta  CT-rich tract
                  atttttttaacttta  TA-rich tract