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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGTCTACATCTGCTGCATTGGGTAAAGGAGGTGGTGTCTTAGACAAACCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAGgtattattgcctacaacaatctgaattttcctttcaatatgatcaaattcatatgcttatttgtgattatactttgctttgattcag

Basic information

species Arabidopsis thaliana
transcript AT1G68660.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125220852|gb|EL234937.1|EL234937
EST:     CCAATTATAGAG-AAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAG                         GAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGA
genomic: CCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAGgtattattgc ... tttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGA
EST: gi|125010124|gb|EL082393.1|EL082393
EST:     TATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAG                         GAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAA
genomic: TATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAGgtattattgc ... tttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAA
EST: gi|124717609|gb|EH809011.1|EH809011
EST:     CCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAG                         GAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAA
genomic: CCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAGgtattattgc ... tttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAA
EST: gi|125158269|gb|EL186943.1|EL186943
EST:     GTGAATCCGAGTTTGATTTAAG                         GAAACCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAA
genomic: GTGAATCCGAGTTTGATTTAAGgtattattgc ... tttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAA
EST: gi|125228398|gb|EL242483.1|EL242483
EST:     CCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAG                         GAAATCAAAGAAGATAGCTCCACCTTACAGGGT
genomic: CCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAGgtattattgc ... tttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGT