1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattattgcctacaacaatctgaattttcctttcaatatgatcaaattcatatgcttatttgtgattatactttgctttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAACTTCAACAAGAGGGAATATGTGGTTCAGGTGTTGATGAAG
species | Arabidopsis thaliana |
transcript | AT1G68660.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAATTATAGAG-AAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAG GAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGAEST: gi|125010124|gb|EL082393.1|EL082393
genomic: CCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAGgtattattgc ... tttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGA
EST: TATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAG GAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAAEST: gi|124717609|gb|EH809011.1|EH809011
genomic: TATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAGgtattattgc ... tttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAA
EST: CCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAG GAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAAEST: gi|125158269|gb|EL186943.1|EL186943
genomic: CCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAGgtattattgc ... tttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAA
EST: GTGAATCCGAGTTTGATTTAAG GAAACCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAAEST: gi|125228398|gb|EL242483.1|EL242483
genomic: GTGAATCCGAGTTTGATTTAAGgtattattgc ... tttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAA
EST: CCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAG GAAATCAAAGAAGATAGCTCCACCTTACAGGGT
genomic: CCAATTATAGAGAAAACCACTCCTGGTCGTGAATCCGAGTTTGATTTAAGgtattattgc ... tttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGT
ttcaatatgatcaaattcatatgcttatttgtgattatactttgctttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAACTTCAACAAGAGGGAATATGTGGTTCAGGTGTTGATGAAG
ctttgat putative branch site (score: 5)
ctttgcttt CT-rich tract
ttatttgtgattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattgcctacaacaatctgaattttcctttcaatatgatcaaattcatatgcttatttgtgattatactttgctttgattcagGAAATCAAAGAAGATAGCTCCACCTTACAGGGTGATACTACACAATGACAACTTCAACAAGAGGGAATATGTGGTTCAGGTGTTGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG