1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTTGTATCTGTACTGGCCTTGGTTTGCTTTACAACGTTAGCCGATTCTTCTACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGGgtttgttcttttatcctcttatcagtgttcattatctttattgattgatttagttatgttagtcaataggatatagagtttagacttgtatataaggttg...
species | Arabidopsis thaliana |
transcript | AT1G65820.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGG GAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTTEST: gi|86075632|gb|DR371389.1|DR371389
genomic: TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGGgtttgttctt ... aatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
EST: TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGG GAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTTEST: gi|125164997|gb|EL191482.1|EL191482
genomic: TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGGgtttgttctt ... aatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
EST: TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGG GAAATACGGTTTCTTGGGGTTGCTAGGTCTGGTGATATGTACCATEST: gi|124729812|gb|EH821214.1|EH821214
genomic: TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGGgtttgttctt ... aatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCAT
EST: TTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGG GAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTTEST: gi|124709886|gb|EH801288.1|EH801288
genomic: TTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGGgtttgttctt ... aatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
EST: CGTCTTACGATCGG GAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
genomic: CGTCTTACGATCGGgtttgttctt ... aatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTATCTGTACTGGCCTTGGTTTGCTTTACAACGTTAGCCGATTCTTCTACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGGgtttgttcttttatcctcttatcagtgttcattatctttattgattgatttagttatgttagtcaataggatatagagtttagacttgtatataaggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC