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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcagagcgtgaagctaagctcaacgatttcttcgtgtttctgataagtaacaagccaccaaagtctgattacttatctttctaatctataatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTTTGGTGTCACTCTGATCCTTGCTTGAGCTACTCGTTTCTGGGGTTAATGA

Basic information

species Arabidopsis thaliana
transcript AT1G65820.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081471|gb|DR377228.1|DR377228
EST:     TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGG                         GAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
genomic: TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGGgtttgttctt ... aatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
EST: gi|86075632|gb|DR371389.1|DR371389
EST:     TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGG                         GAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
genomic: TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGGgtttgttctt ... aatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
EST: gi|125164997|gb|EL191482.1|EL191482
EST:     TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGG                         GAAATACGGTTTCTTGGGGTTGCTAGGTCTGGTGATATGTACCAT
genomic: TACTTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGGgtttgttctt ... aatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCAT
EST: gi|124729812|gb|EH821214.1|EH821214
EST:     TTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGG                         GAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
genomic: TTTAAAGGTTATGCTACTGGAGATCCCATGAAGCGTCTTACGATCGGgtttgttctt ... aatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
EST: gi|124709886|gb|EH801288.1|EH801288
EST:     CGTCTTACGATCGG                         GAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT
genomic: CGTCTTACGATCGGgtttgttctt ... aatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtaacaagccaccaaagtctgattacttatctttctaatctataatgttgcagGAAATACGGTTTCTTGGGGTTGCTAGGTCTGATGATATGTACCATCTCGTTTGGTGTCACTCTGATCCTTGCTTGAGCTACTCGTTTCTGGGGTTAATGA
                                  ttctaat  putative branch site (score: 2)
                                 tttctaatctataat  TA-rich tract