1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttctgattctgtattcgattatcacttgtcttttatctctgctttcttattgtatatgtaaaattgatatatctgctatacttttccttctgattttaagTAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAAATATTTGAGGTGAAGCTGAAGGAAATCAAAGCGGTCCTTACGAGCCAAGTGACAGAG
species | Arabidopsis thaliana |
transcript | AT1G65220.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAGTTTTGCCGAGCATTTCAC TAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAAATATTTGAEST: gi|124769122|gb|EH859252.1|EH859252
genomic: AAAGTTTTGCCGAGCATTTCACgtgagtttta ... tgattttaagTAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAAATATTTGA
EST: CGGACTACAGAAAGTTTTGCCGAGCATTTCAC TAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGEST: gi|164008840|gb|ES169857.1|ES169857
genomic: CGGACTACAGAAAGTTTTGCCGAGCATTTCACgtgagtttta ... tgattttaagTAAGGCAGGATTGACAGCTCTGGTAGAGTACAATG
EST: GACTACAGAAAGTTTTGCCGAGCATTTCAC TAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAA-TATTTGA
genomic: GACTACAGAAAGTTTTGCCGAGCATTTCACgtgagtttta ... tgattttaagTAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAAATATTTGA
cttattgtatatgtaaaattgatatatctgctatacttttccttctgattttaagTAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAAATATTTGAGGTGAAGCTGAAGGAAATCAAAGCGGTCCTTACGAGCCAAGTGACAGAG
ttctgat putative branch site (score: 3)
cttttccttctgattt CT-rich tract
tgtatatgtaaaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgattctgtattcgattatcacttgtcttttatctctgctttcttattgtatatgtaaaattgatatatctgctatacttttccttctgattttaagTAAGGCAGGATTGACAGCTCTGGTAGAGTACAATGAAAGGAAAATATTTGAGGTGAAGCTGAAGGAAATCAAAGCGGTCCTTACGAGCCAAGTGACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- ctgattc
- - - - - - - - - - - - - - - - - -tctctgc