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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTTGTTGCCAGAAGTTTAGAGTCATCTGATCTTAATTTCTCAAGATACGGTGATATTTTCTTTGAGgtaaattctccatatatcaatactgtctcagctatcttctattgcctgtgtattttttgttttcttgtagcaaggggctttttgttttgcttgtctttccgagatttaataattgatggatctcttttattatataag

Basic information

species Arabidopsis thaliana
transcript AT1G65220.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125237162|gb|EL251247.1|EL251247
EST:     TAGAGTCATCTGATCTTAATTTCTCAAGATACGGTGATATTTTCTTTGAG                         GTTGTTTTCATTGGAGGACGTACTCAAACTGGTTCAGTGAAATCT
genomic: TAGAGTCATCTGATCTTAATTTCTCAAGATACGGTGATATTTTCTTTGAGgtaaattctc ... attatataagGTTGTTTTCATTGGAGGACGTACTCAAACTGGTTCAGTGAAATCT
EST: gi|301502270|gb|HO207810.1|HO207810
EST:     TAGAGTCATCTGATCTTAATTTCTCAAGATACGGTGATATTTTCTTTGAG                         GTTGTTTTCATTGGAGGACGTACTCAAACTGGTTCAGTGAAATCTGATGAA
genomic: TAGAGTCATCTGATCTTAATTTCTCAAGATACGGTGATATTTTCTTTGAGgtaaattctc ... attatataagGTTGTTTTCATTGGAGGACGTACTCAAACTGGTTCAGTGAAATCTGATGAA