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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattatatatgcatctcaacaaagaaatttaaaactataactctttgttcattcagacgcgtgactaatatctgatcttagTTTCAGCGCCTTTGAAACGAAGTAGCAGTTGGTCATTCGATGAAAAGCTTCTCGTCCAATCTTTATATAAG

Basic information

species Arabidopsis thaliana
transcript AT1G64110.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116448697|gb|EG491289.1|EG491289
EST:     CTGGTGGTACCTTGAGGAGGCAAAGCAGTGGTGTGGATATCAAATCAAG                         CTCAATGGAAGGCTCTAGTAATCCTCCAAAGCTTCGTCGAAACTCTTCAGC
genomic: CTGGTGGTACCTTGAGGAGGCAAAGCAGTGGTGTGGATATCAAATCAAGgtttgtgttt ... atatatgcagCTCAATGGAAGGCTCTAGTAATCCTCCAAAGCTTCGTCGAAACTCTTCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaaaactataactctttgttcattcagacgcgtgactaatatctgatcttagTTTCAGCGCCTTTGAAACGAAGTAGCAGTTGGTCATTCGATGAAAAGCTTCTCGTCCAATCTTTATATAAG
     aaactataa  TA-rich tract