1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTGCTTGCATATTCTCTATAGTTGCTTGCATTGTTGGTAGTGATGAACTTTCCGAGGCTTCTCAGATACTCTCTTGCTGTGCTGATATGGTCTACTGCACgtctgtatttacttcttgtgatttttagattctccctctaatctattcatgttcacgaattgctaatattttgcggtcttgattttcttgcag
species | Arabidopsis thaliana |
transcript | AT1G63830.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTCTTGCTGTGCTGATATGGTCTACTGCAC GGTCTGCGCATGTATGCAGEST: gi|125185229|gb|EL200183.1|EL200183
genomic: CTCTTGCTGTGCTGATATGGTCTACTGCACgtctgtattt ... tttcttgcagGGTCTGCGCATGTATGCAG
EST: TTCTCAGATACTCTCTTGCTGTGCTGATATGGTCTACTGCAC GGTCTGCGCATGTATGCAGEST: gi|164227380|gb|EL976397.1|EL976397
genomic: TTCTCAGATACTCTCTTGCTGTGCTGATATGGTCTACTGCACgtctgtattt ... tttcttgcagGGTCTGCGCATGTATGCAG
EST: TCCGAGGCTTCTCAGATACTCTCTTGCTGTGCTGATATGGTCTACTGCAC GGTCTGCGCATGTATGCAGACACAEST: gi|164133434|gb|ES055671.1|ES055671
genomic: TCCGAGGCTTCTCAGATACTCTCTTGCTGTGCTGATATGGTCTACTGCACgtctgtattt ... tttcttgcagGGTCTGCGCATGTATGCAGACACA
EST: GATACTCTCTTGCTGTGCTGATATGGTCTACTGCAC GGTCTGCGCATGTATGCAGEST: gi|116478578|gb|EG521170.1|EG521170
genomic: GATACTCTCTTGCTGTGCTGATATGGTCTACTGCACgtctgtattt ... tttcttgcagGGTCTGCGCATGTATGCAG
EST: GCTGTGCTGATATGGTCTACTGCAC GGTCTGCGCATGTATGCAG
genomic: GCTGTGCTGATATGGTCTACTGCACgtctgtattt ... tttcttgcagGGTCTGCGCATGTATGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTTGCATATTCTCTATAGTTGCTTGCATTGTTGGTAGTGATGAACTTTCCGAGGCTTCTCAGATACTCTCTTGCTGTGCTGATATGGTCTACTGCACgtctgtatttacttcttgtgatttttagattctccctctaatctattcatgttcacgaattgctaatattttgcggtcttgattttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT