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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCGTCGCAAGATAAGTTGGATAAGATGAAACTTAGGCAAGATTACCGGAATTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTCCCTgtaaatctcagtctcttttgtttttgtttttatgtctcttaacttcattgttttttctattgaagaactgatttttgtttttttcgggaattatgaacttactttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G63830.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124815383|gb|EH900249.1|EH900249
EST:     GAATTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTCCCT                         ATTGCTGCATCTCGTGTCTGTGTGG
genomic: GAATTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTCCCTgtaaatctca ... ctttttgcagATTGCTGCATCTCGTGTCTGTGTGG
EST: gi|164199342|gb|ES143477.1|ES143477
EST:     CACCGTCACCGCCGACACTCCCT                         ATTGCTGCATCTCGTGTCTGTG
genomic: CACCGTCACCGCCGACACTCCCTgtaaatctca ... ctttttgcagATTGCTGCATCTCGTGTCTGTG