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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttatagattttgtaaccgattttgatttattgcttttgctctgtatagtcactgatttagggtttttcgaatctgaacttcttcttttttgagtttccaaagCAATGGCGGCGTCGCAAGATAAGTTGGATAAGATGAAACTTAGGCAAGATTACCGGAATTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACAC

Basic information

species Arabidopsis thaliana
transcript AT1G63830.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125018865|gb|EL091134.1|EL091134
EST:     ATCAATTAAAGGTTTACGCGTGAAGCAGATCATCAG                         CAATGGCGGCGTCGCAAGATAAGTTGGATAAG
genomic: ATCAATTAAAGGTTTACGCGTGAAGCAGATCATCAGgttcttatag ... gtttccaaagCAATGGCGGCGTCGCAAGATAAGTTGGATAAG
EST: gi|125122981|gb|EL169430.1|EL169430
EST:     AAGTTTCTGCTTTCATCAATTAAAGGTTTACGCGTGAAGCAGATCATCAG                         CAATGGCGGCG
genomic: AAGTTTCTGCTTTCATCAATTAAAGGTTTACGCGTGAAGCAGATCATCAGgttcttatag ... gtttccaaagCAATGGCGGCG
EST: gi|86081142|gb|DR376899.1|DR376899
EST:     AAGTTTCTGCTTTCATCAATTAAAGGTTTACGCGTGAAGCAGATCATCAG                         CAATGGCGGCGTCGCAAGATAAGTTGGATAAGATGAAACTTAGGCAAGATT
genomic: AAGTTTCTGCTTTCATCAATTAAAGGTTTACGCGTGAAGCAGATCATCAGgttcttatag ... gtttccaaagCAATGGCGGCGTCGCAAGATAAGTTGGATAAGATGAAACTTAGGCAAGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcactgatttagggtttttcgaatctgaacttcttcttttttgagtttccaaagCAATGGCGGCGTCGCAAGATAAGTTGGATAAGATGAAACTTAGGCAAGATTACCGGAATTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACAC
  cactgat  putative branch site (score: 3)
                              cttcttcttttttgag  putative PPT
                                  ttctttttt  TA-rich tract