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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctctaaaaactcctatcaatcttaatgagttatgcagcttttcattgtttcaatttccttttatttttcttgcagGATATTGTTTCGAAAGTTTTGTCTTTTTCACAAAAAAGACCTCGGGCTCTTTGTATAATGTCAGGCACTGGAACGGTTTCTTCAGTCACTCTGCGTGAAC

Basic information

species Arabidopsis thaliana
transcript AT1G63470.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124828758|gb|EH913594.1|EH913594
EST:     CTGGACTTGCTTTTGCACCTCATGTGATCAGTGTTGGATCAGGAGAA                         GATATTGTTTCGAAAGTTTTGTCTTTTTCACAAAAAAGACCTCGGGCTCTT
genomic: CTGGACTTGCTTTTGCACCTCATGTGATCAGTGTTGGATCAGGAGAAgtaatctcta ... tttcttgcagGATATTGTTTCGAAAGTTTTGTCTTTTTCACAAAAAAGACCTCGGGCTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaatgagttatgcagcttttcattgtttcaatttccttttatttttcttgcagGATATTGTTTCGAAAGTTTTGTCTTTTTCACAAAAAAGACCTCGGGCTCTTTGTATAATGTCAGGCACTGGAACGGTTTCTTCAGTCACTCTGCGTGAAC
 tcttaat  putative branch site (score: 3)
                 cttttcattgtttcaa  putative PPT
                           tttcaatttcctttta  TA-rich tract