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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtaaagtgagacctgcttgttatctgagtaatacaattagctaagctaagctttatgttcacattctttcttttttctgactttctctgatgcagCTGGTTGATTTCGAATGCTGGAAGACAATTCTTGCAAGATCAGAAAAGAATTTGAGAAATATTAGTAGCCAGGGTTCGATATGTGTACTCCCAAACGGAA

Basic information

species Arabidopsis thaliana
transcript AT1G63430.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63430.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA08G01640.1 (Glycine max), 3'ss of exon 10
--------gtaaagtaaagtgagacctgcttgt-----tatc-tgagtaatacaattagctaagctaagctttatgttcacattctttct----tttttctgactt-------tctctgatg-cagCTGGTTGATTTCGAATGCTGGAAGACAATTCTTGCAAGATCAGAAAAGAATTTGAGAAATATTAGTAGCCAGGGTTCGATATGTGTACTCCCAAACGGAA
          |||   |  | |  | | || |      |||  ||| |      | || || | |       |||||| |  | || | |    ||||||| | ||        ||   ||  |||||||||||||| ||| | |||||||||||||||| |||||| ||||| ||||   | ||| |||||||||||||| |  | ||||| || ||||||    
gtgtttttacaaacctagtttaagctttctagcatgcctattatgattgtcctgaatatcttaacatgcacctatgtttatgtgctgtatggtatttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCCGAAAAAAATTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACTCTC

upper sequence: AT1G63430.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA11G02690.1 (Glycine max), 3'ss of exon 11
-----------------------------------------------------------------------------gta-aagtaaagtgagacctgcttgt-tatctgagtaatacaattagctaagctaagctttatgttcacattct-ttcttttttctgactttctctgatgcagCTGGTTGATTTCGAATGCTGGAAGACAATTCTTGCAAGATCAGAAAAGAATTTGAGAAATATTAGTAGCCAGGGTTCGATATGTGTACTCCCAAACGGAA
                                                                             | | || || ||| | |    | | | | | |    ||| || |  | |      | |   | | |  | |    ||||  ||     |   ||    ||||| |||||||||| ||| | ||||||||||| |||| |||||||||||||||||   |    ||| | ||||| |||    | ||| | || |||||     
gtgcacgcactagctagttcaaatcttcaaatttaccaattacaatttttctcaatatctcttgaagtcaagaatgagcagaaatagagtaacatgcacctatgtttatatacaatgcattatgttgga--gatccaaaagcttgcttaagattctcattgtcatcaacctgaactgcagTTGGTTGATTTTGAAAGTTGGAAGACAATCCTTGAAAGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAAGGTGGTGTCTGTATTCTTCCAAATTCCC

upper sequence: AT1G63430.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA05G37960.1 (Glycine max), 3'ss of exon 11
--------------------------------------------gtaaagtaaagtgagac-ctgc-ttgttatctgagtaatacaattagctaagctaagctttatgttcacattct-----ttcttttttctgactt-------tctctgatg-cagCTGGTTGATTTCGAATGCTGGAAGACAATTCTTGCAAGATCAGAAAAGAATTTGAGAAATATTAGTAGCCAGGGTTCGATATGTGTACTCCCAAACGGAA
                                             |   | ||| |      ||||  ||  |  |||| |  | | |    |||  |   | | ||||| |  | ||     || |||||||| | ||        ||   ||  |||||||||||||| ||| | |||||||||||||||| |||||||||||  || |   | ||| |||||||||||||| |  | ||||| || ||||||    
gtgtttatgcaacctagtttaagctttctagcatacctattatgattgtgcaaaatatcttactgcactgaaaaatgaggataagagtcgtttaacatgcacct-atgtttatgtgctgtatattattttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAGAAACTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACACTC

upper sequence: AT1G63430.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA01G42770.1 (Glycine max), 3'ss of exon 12
------------------------------------------------------------------------------gta-aagtaaagtgagacctgcttgttatc-tgagtaatacaattagct--aagctaagctttatgttcacattctttcttttttctgactttctctgatgcagCTGGTTGATTTCGAATGCTGGAAGACAATTCTTGCAAGATCAGAAAAGAATTTGAGAAATATTAGTAGCCAGGGTTCGATATGTGTACTCCCAAACGGAA
                                                                              | | || || ||| | |    | | |  |  |    ||   | |  | |  |     | |    |||  |   |  |  || |     ||   ||    ||||| |||||||||| ||| | ||||||||||| |||| |||||||||||||||||   |    ||| | ||||| ||| | || ||||| || |||||     
gtgttcacactagctagttcaaatcttcaaatttaccaattacaattttgttcaatatcttcttgaagtcaggaatgagcagaaatagagtaacatgcacctatgcttatatacaacgtattatgttggagatccaacagcttgtataagattctcattgtcatgaac---ctgaattgcagTTGGTTGATTTTGAAAGTTGGAAGACAATCCTTGAAAGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAAGGTGCTATCTGTGTTCTTCCAAATTCCC

upper sequence: AT1G63430.2 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: Vv02s0025g03700.t01 (Vitis vinifera), 3'ss of exon 11
gtaaagtaaagtgagacctgcttgttatctgagtaatacaattagctaagctaagctttatgttcacattct--ttcttttttctgactttctctgatgcagCTGGTTGATTTCGAATGCTGGAAGACAATTCTTGCAAGATCAGAAAAGAATTTGAGAAATATTAGTAGCCAGGGTTCGATATGTGTACTCCCAAACGGAA
 |   |     |||   ||  |||  ||  || | |||||| |    |   |||     || |    ||| |  |  | || |||    || | |  ||||||| ||||| || ||| | |||||| |||||||| |||||||||||||||| |   |    ||| | ||||| ||| | || ||||| || |||||     
ttcctggtttttgaattctcgttgaaatgaga-tgatacaactctacagcttaaaacaaatttctgaattttgatgatgttctcttgaatt-tgtactgcagCTAGTTGACTTTGAAAGTTGGAAGTCAATTCTTTCAAGATCAGAAAAGAACTCAGGCTCCATTGGCAGCCAAGGTGCCATCTGTGTTCTTCCAAATTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaagctaagctttatgttcacattctttcttttttctgactttctctgatgcagCTGGTTGATTTCGAATGCTGGAAGACAATTCTTGCAAGATCAGAAAAGAATTTGAGAAATATTAGTAGCCAGGGTTCGATATGTGTACTCCCAAACGGAA
                 ttcacattctttcttt  CT-rich tract
                      attctttctttttt  TA-rich tract