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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCGAAATTACTTGGATATTGCAAAGAGATCTCACCATTTACAAGAATGCTTGTTTTTGAGTATGCATCAAACGGAACACTATATGAGCACCTTCACTgtaaatagtctaacttacctcagagctttgttgcatcatcctgtattgttttagctagataacatttttatgtgaaatattttgatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G63430.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63430.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA08G01640.1 (Glycine max), 5'ss of exon 9
ACAGCGAAATTACTTGGATATTGCAAAGAGATCTCACCATTTACAAGAATGCTTGTTTTTGAGTATGCATCAAACGGAACACTATATGAGCACCTTCACTgtaaatagtctaacttacctcagagctttgttgcat-catcctgtattgttttagctagataacatttttatgtgaaatattttgatgcag
   |  ||  |  | |||||||| | ||||| |   ||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| || |||    ||||  | || | ||   |||    | |||  ||||| |  ||||| || ||  | | ||  |||||  ||||   | | | |||
---GGAAAGCTGTTAGGATATTGTAGAGAGAGCAGTCCATTTACAAGGATGCTGGTTTTTGAATATGCATCAAATGGAACACTTTATGAGCACCTACATTGTTgtaagtcacaatt-cttc---gctcgtctacatatatccttttgtgtttcag-taccttaaatcattatg--aaat-catggttacag

upper sequence: AT1G63430.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA05G37960.1 (Glycine max), 5'ss of exon 10
ACAGCGAAATTACTTGGATATTGCAAAGAGATCTCACCATTTACAAGAATGCTTGTTTTTGAGTATGCATCAAACGGAACACTATATGAGCACCTTCACTgtaaatagtctaacttacctcagagctttgttgcatcatcctgtat-tgttttagctagataacatttttatgtgaaatattttgatgcag
   |  ||  | || |||||||| | ||||| |   ||||||||||| ||||| |||||||| ||||||||||| || ||||| ||||||||||| || |||    || |    ||        | ||   || ||  |  |   | ||| | ||     |||    |||   |||||| | | | | |||
---GGAAAGCTGCTAGGATATTGTAGAGAGAGCAATCCATTTACAAGGATGCTGGTTTTTGAATATGCATCAAATGGGACACTTTATGAGCACCTACATTGTTgtaagccacggttcttaactcgtttacatgtattttttttcctgtgtatcagtaccttaaatcattt---tgaaat-tatggctacag

upper sequence: AT1G63430.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 10
ACAGCGAAATTACTTGGATATTGCAAAGAGATCTCACCATTTACAAGAATGCTTGTTTTTGAGTATGCATCAAACGGAACACTATATGAGCACCTTCACTgtaaat--agtctaacttacctcagagctttgttgcatcatcctgtattgttttagctagataacatttttatgtgaaatattttgatgcag
||||  |||||||| || |||||   ||||| ||| ||||||||||||||||| |||||||| |||||||| || ||||| || |||||||||||||| ||||| |  ||  |   ||   | | |||| | ||||||||   ||      || || ||||| | ||||     | |   ||||  || |||
ACAGGAAAATTACTGGGCTATTGTCGAGAGAGCTCTCCATTTACAAGAATGCTGGTTTTTGAATATGCATCGAATGGAACGCTCTATGAGCACCTTCATTgtaagttgagcttcttttctgtaacagctgt-ttgcatcaatgtg-----cttcag-tagatgaaatttgagcct-attcatttaaatacag