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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACAAGGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGACTGGATTGATGTTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatgttcacaccacattttcaaaatatctttttgctaacaaaaccaatgtgttatggtttagtctcggtttgatggaactataggaaacggttagtaaatgttataaccgagttaaaccggaagaacgacatgcaatcttaattgagtatgattcggtacagctaaaccgatctgaattgtctgtag

Basic information

species Arabidopsis thaliana
transcript AT1G62380.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125293892|gb|EL307977.1|EL307977
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGG
EST: gi|125024479|gb|EL096748.1|EL096748
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAG
EST: gi|124925146|gb|EL003166.1|EL003166
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGAC
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGAC
EST: gi|124877849|gb|EH957286.1|EH957286
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GAGATAACCAACGGGAAGTATAAGAGT
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGT
EST: gi|116476057|gb|EG518649.1|EG518649
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCCCCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125275896|gb|EL289981.1|EL289981
EST:     CATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125327733|gb|EL341813.1|EL341813
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTG
EST: gi|125024846|gb|EL097115.1|EL097115
EST:     TCCTCCTCTCAACCACTCTATTGTCATCAAATCTTGGTGACCAACTTGAG                         GTGATAACCAAC
genomic: TCCTCCTCTCAACCACTCTATTGTCATCAA-TCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAAC
EST: gi|125150868|gb|EL183294.1|EL183294
EST:     CTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125080035|gb|EL141789.1|EL141789
EST:     TGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124770738|gb|EH860868.1|EH860868
EST:     CTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|86079008|gb|DR374765.1|DR374765
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124716950|gb|EH808352.1|EH808352
EST:     AATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: AATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124999081|gb|EL071350.1|EL071350
EST:     CTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTAGCACCGTGTGGTGACTCA
genomic: CTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCT-GCACCGTGTGGTGACTCA
EST: gi|124947780|gb|EL023593.1|EL023593
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTG
EST: gi|124807887|gb|EH894291.1|EH894291
EST:     TTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125317626|gb|EL331711.1|EL331711
EST:     TCAATACTTGGTGACCAACTTGAG                         GTGATAACCAAC-GGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TCAAT-CTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125212664|gb|EL227618.1|EL227618
EST:     CAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124811790|gb|EH896656.1|EH896656
EST:     TCCTCCTCTCAACCACTCTTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TCCTCCTCTCAACCACTC-TATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124765671|gb|EH855801.1|EH855801
EST:     TGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|47827832|gb|CK117516.1|CK117516
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124758269|gb|EH848399.1|EH848399
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGT
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGT
EST: gi|125319021|gb|EL333106.1|EL333106
EST:     CTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125086893|gb|EL146216.1|EL146216
EST:     CTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|47829880|gb|CK119564.1|CK119564
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124959356|gb|EL034060.1|EL034060
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125252262|gb|EL266347.1|EL266347
EST:     CTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125195228|gb|EL210182.1|EL210182
EST:     TGACCAACTTGGG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|163990815|gb|ES037977.1|ES037977
EST:     CCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124933775|gb|EL010902.1|EL010902
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAAACCAACGGGAAGTA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAA-CCAACGGGAAGTA
EST: gi|124948469|gb|EL024212.1|EL024212
EST:     CTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124751730|gb|EH841860.1|EH841860
EST:     TCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124922823|gb|EL001076.1|EL001076
EST:     CTTGGTGACCAACTTGGG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125008963|gb|EL081232.1|EL081232
EST:     CCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAGCGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124869773|gb|EH954210.1|EH954210
EST:     CCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|47830810|gb|CK120494.1|CK120494
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125212827|gb|EL227781.1|EL227781
EST:     TGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|47828389|gb|CK118073.1|CK118073
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125262973|gb|EL277058.1|EL277058
EST:     CTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125238488|gb|EL252573.1|EL252573
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTAT
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTAT
EST: gi|164018633|gb|ES063950.1|ES063950
EST:     AACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGC
genomic: AACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGC
EST: gi|125239203|gb|EL253288.1|EL253288
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTG
EST: gi|124845169|gb|EH929606.1|EH929606
EST:     TCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124783225|gb|EH873097.1|EH873097
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGT
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGT
EST: gi|124731041|gb|EH822443.1|EH822443
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCG
EST: gi|125052142|gb|EL124035.1|EL124035
EST:     ACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: ACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125039579|gb|EL111848.1|EL111848
EST:     TCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124850440|gb|EH934877.1|EH934877
EST:     TTCCTCCTCTCAACCACTCTATTGTCNTCAATCTTGGTG-CCAACTTGAG                         GTGATAACCAACGGGAAGTATAAG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAG
EST: gi|124897768|gb|EH973982.1|EH973982
EST:     TCCTCCTCTCAACCACTCTATTGTCTATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACT
genomic: TCCTCCTCTCAACCACTCTATTGTC-ATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACT
EST: gi|124730337|gb|EH821739.1|EH821739
EST:     AACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGT
genomic: AACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGT
EST: gi|124836519|gb|EH920958.1|EH920958
EST:     CCTCCCCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125314466|gb|EL328551.1|EL328551
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTG
EST: gi|125153175|gb|EL184451.1|EL184451
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCA
EST: gi|116484386|gb|EG526978.1|EG526978
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124862574|gb|EH947011.1|EH947011
EST:     TCCTCCTTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTG
genomic: TCCTCC-TCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTG
EST: gi|125039187|gb|EL111456.1|EL111456
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGC
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGC
EST: gi|124752333|gb|EH842463.1|EH842463
EST:     TCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|116424066|gb|EG466658.1|EG466658
EST:     TTCCTCCTCTCAACCACTCTATTGCCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACTGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|116424068|gb|EG466660.1|EG466660
EST:     TTCCTCCTCTCAACCACTCTATTGCCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACTGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|116484431|gb|EG527023.1|EG527023
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125239680|gb|EL253765.1|EL253765
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAG
EST: gi|124812359|gb|EH897225.1|EH897225
EST:     AACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: AACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125045021|gb|EL117290.1|EL117290
EST:     TTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|86084853|gb|DR380612.1|DR380612
EST:     ATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: ATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124760920|gb|EH851050.1|EH851050
EST:     TTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAAC-GGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124985059|gb|EL057674.1|EL057674
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGG
EST: gi|125310112|gb|EL324197.1|EL324197
EST:     CAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|116469886|gb|EG512478.1|EG512478
EST:     TTCCTCCTCTCAACCACTTTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125312197|gb|EL326282.1|EL326282
EST:     CCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|116484387|gb|EG526979.1|EG526979
EST:     TTCCTCCTCTCAACCACTTTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124937686|gb|EL014405.1|EL014405
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGT
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGT
EST: gi|116424067|gb|EG466659.1|EG466659
EST:     TTCCTCCTCTCAACCACTCTATTGCCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACTGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125315642|gb|EL329727.1|EL329727
EST:     TCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125309928|gb|EL324013.1|EL324013
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTA
EST: gi|125266556|gb|EL280641.1|EL280641
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACT
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACT
EST: gi|124909567|gb|EH983647.1|EH983647
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAG
EST: gi|125212147|gb|EL227101.1|EL227101
EST:     TCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTAGAG                         GTGATAACCAACGGGAAGTATAAGAGTG
genomic: TCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTT-GAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTG
EST: gi|125253609|gb|EL267694.1|EL267694
EST:     ACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: ACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125094431|gb|EL151927.1|EL151927
EST:     TCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAG
genomic: TCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAG
EST: gi|125077528|gb|EL140281.1|EL140281
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTC
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTC
EST: gi|125034910|gb|EL107179.1|EL107179
EST:     TTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125314756|gb|EL328841.1|EL328841
EST:     TCAACCACTCTATTGTCATCAATCTTGGTGACCAAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCA
genomic: TCAACCACTCTATTGTCATCAATCTTGGTGACC-AACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCA
EST: gi|125087187|gb|EL146402.1|EL146402
EST:     CTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124991805|gb|EL064074.1|EL064074
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCT
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCT
EST: gi|125292270|gb|EL306355.1|EL306355
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGA
EST: gi|47830329|gb|CK120013.1|CK120013
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125221660|gb|EL235745.1|EL235745
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACC
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACC
EST: gi|124914739|gb|EH988613.1|EH988613
EST:     GGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: GGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125251740|gb|EL265825.1|EL265825
EST:     TCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: TCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125135523|gb|EL175797.1|EL175797
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTG
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTG
EST: gi|125258269|gb|EL272354.1|EL272354
EST:     CACTCTATTGTCATCAATCTTGGTTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
genomic: CACTCTATTGTCATCAATCTTGG-TGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|124890261|gb|EH969163.1|EH969163
EST:     AATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGGAAGTATAAGAGTGTGCT
genomic: AATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGG-AAGTATAAGAGTGTGCT
EST: gi|116424069|gb|EG466661.1|EG466661
EST:     TTCCTCCTCTCAACCACTCTATTGCCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACTGTGTGGTGACTCAA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAA
EST: gi|125197273|gb|EL212227.1|EL212227
EST:     TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAG                         GTGATAACCAACGGGAAGTA
genomic: TTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatg ... ttgtctgtagGTGATAACCAACGGGAAGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGACAAGGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGACTGGATTGATGTTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGgtatgtcatgttcacaccacattttcaaaatatctttttgctaacaaaaccaatgtgttatggtttagtctcggtttgatggaactataggaaacggttagtaaatgttataaccgagttaaaccggaagaacgacatgcaatcttaattgagtatgattcggtacagctaaaccgatctgaattgtctgtag

- - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC