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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATTCAAGAAACTCTCTGAAGCTATTGGAGGATGAGATTTGTCGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCGgtaaacatcgattgtgttgtaaacaagcatttgtgttcttgatcctctgattgataaagcattgcttatggaatttttttacacag

Basic information

species Arabidopsis thaliana
transcript AT1G61415.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116468628|gb|EG511220.1|EG511220
EST:     CGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCG                         GGAAGGTTTTGTGA
genomic: CGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCGgtaaacatcg ... ttttacacagGGAAGGTTTTGTGA
EST: gi|116444209|gb|EG486801.1|EG486801
EST:     TAACCGAGAAGCG                         GGAAGG-TTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG
genomic: TAACCGAGAAGCGgtaaacatcg ... ttttacacagGGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG
EST: gi|116468607|gb|EG511199.1|EG511199
EST:     CGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCG                         GGAAGGTTTTGTG
genomic: CGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCGgtaaacatcg ... ttttacacagGGAAGGTTTTGTG
EST: gi|116444199|gb|EG486791.1|EG486791
EST:     TAACCGAGAAGCG                         GGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG
genomic: TAACCGAGAAGCGgtaaacatcg ... ttttacacagGGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG
EST: gi|116444203|gb|EG486795.1|EG486795
EST:     TAACCGAGAAGCG                         GGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG
genomic: TAACCGAGAAGCGgtaaacatcg ... ttttacacagGGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG
EST: gi|116407152|gb|EG449744.1|EG449744
EST:     GCATAGTGAGCTAATTACAAGACTAACCGAGAAGCG                         GGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG
genomic: GCATAGTGAGCTAATTACAAGACTAACCGAGAAGCGgtaaacatcg ... ttttacacagGGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG
EST: gi|116468629|gb|EG511221.1|EG511221
EST:     CGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCG                         GGAAGGTTTTGTG
genomic: CGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCGgtaaacatcg ... ttttacacagGGAAGGTTTTGTG
EST: gi|116468626|gb|EG511218.1|EG511218
EST:     CGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCG                         GGAAGGTTTTGTG
genomic: CGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCGgtaaacatcg ... ttttacacagGGAAGGTTTTGTG
EST: gi|116468625|gb|EG511217.1|EG511217
EST:     CGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCG                         GGAAGGTTTTGTGA
genomic: CGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCGgtaaacatcg ... ttttacacagGGAAGGTTTTGTGA
EST: gi|116407148|gb|EG449740.1|EG449740
EST:     GCATAGTGAGCTAATTACAAGACTAACCGAGAAGCG                         GGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG
genomic: GCATAGTGAGCTAATTACAAGACTAACCGAGAAGCGgtaaacatcg ... ttttacacagGGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG
EST: gi|116444223|gb|EG486815.1|EG486815
EST:     TAACCGAGAAGCG                         GGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG
genomic: TAACCGAGAAGCGgtaaacatcg ... ttttacacagGGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCAAAGGGAGATTGAAGACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGATTCAAGAAACTCTCTGAAGCTATTGGAGGATGAGATTTGTCGTTTGAGAAATGAGCATAGTGAGCTAATTACAAGACTAACCGAGAAGCGgtaaacatcgattgtgttgtaaacaagcatttgtgttcttgatcctctgattgataaagcattgcttatggaatttttttacacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC