1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctcctttaggtttgactctgagctcacacttcatgacctatattgaaagccagcaactttagctgaacttgacaatctcttttgtctgtcaatttcaaagATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGTAAAATAAAGTATATCGGTTTGTCTGAAGCTTCAGCTTCAACTATCAGAAGAGCACATGCTGTTCACC
species | Arabidopsis thaliana |
transcript | AT1G60730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCTCTATTATCAGCATCGAATTGATACTCGTGTCCCTATCGAAATCACT ATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGTAAAATAAAGTATATCGGTEST: gi|124704124|gb|EH795526.1|EH795526
genomic: ATCTCTATTATCAGCATCGAATTGATACTCGTGTCCCTATCGAAATCACTgtaagcactc ... aatttcaaagATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGTAAAATAAAGTATATCGGT
EST: TATCAGCATCGAATTGATACTCGTGTCCCTATCGAAATCACT ATTGGAGAGCTCAAGAAGCEST: gi|301502122|gb|HO207662.1|HO207662
genomic: TATCAGCATCGAATTGATACTCGTGTCCCTATCGAAATCACTgtaagcactc ... aatttcaaagATTGGAGAGCTGAAGAAGC
EST: ATCTCTATTATCAGCATCGAATTGATACTCGTGTCCCTATCGAAATCACT ATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGTAAAATAAAGTATATCGGT
genomic: ATCTCTATTATCAGCATCGAATTGATACTCGTGTCCCTATCGAAATCACTgtaagcactc ... aatttcaaagATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGTAAAATAAAGTATATCGGT
aaagccagcaactttagctgaacttgacaatctcttttgtctgtcaatttcaaagATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGTAAAATAAAGTATATCGGTTTGTCTGAAGCTTCAGCTTCAACTATCAGAAGAGCACATGCTGTTCACC
acttgac putative branch site (score: 4)
aatttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctttaggtttgactctgagctcacacttcatgacctatattgaaagccagcaactttagctgaacttgacaatctcttttgtctgtcaatttcaaagATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGTAAAATAAAGTATATCGGTTTGTCTGAAGCTTCAGCTTCAACTATCAGAAGAGCACATGCTGTTCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT