1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcgattttgataattccccttttgatattgatattttttaatatttgagttcgtgatttagatatgggaacactggccttgtgatatgggaacactggccttgattcgctgagcttcagagctgtataaatgatttggatgttgaaagtttggatttttgttgaaagtttggatttttgtcagGCTCTCAAGGATGGGGTGAGAGAAAAAGTGGAACTTGCGACCAAATATGGAATCAGGTATGCAGAGGGGAAAGTAGAGTTTAAGGGAGATCCTGCTTATG
species | Arabidopsis thaliana |
transcript | AT1G60730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACACCTCCGATATCTACGGTCCTGAGACCAACGAGCTTCTCCTCAGCAAG GCTCTCAAGGATGGGGTGAGAGAAAAAGTGGAACTTGCAACCAAATATGGAEST: gi|301502127|gb|HO207667.1|HO207667
genomic: ACACCTCCGATATCTACGGTCCTGAGACCAACGAGCTTCTCCTCAGCAAGgttcgatttt ... tttttgtcagGCTCTCAAGGATGGGGTGAGAGAAAAAGTGGAACTTGCGACCAAATATGGA
EST: ACACCTCCGATATCTACGGTCCTGAGACCAACGAGCTTCTCCTCAGCAAG GCTCTCAAGGATGGGGTGAGAGAAAAAGTGGAACTTGCGACCAAATATGGAEST: gi|301502122|gb|HO207662.1|HO207662
genomic: ACACCTCCGATATCTACGGTCCTGAGACCAACGAGCTTCTCCTCAGCAAGgttcgatttt ... tttttgtcagGCTCTCAAGGATGGGGTGAGAGAAAAAGTGGAACTTGCGACCAAATATGGA
EST: ACACCTCCGATATCTACGGTCCTGAGACCAACGAGCTTCTCCTCAGCAAG GCTCTCAAGGATGGGGTGAGAGAAAAAGTGGAACTTGCGACCAAATATGGA
genomic: ACACCTCCGATATCTACGGTCCTGAGACCAACGAGCTTCTCCTCAGCAAGgttcgatttt ... tttttgtcagGCTCTCAAGGATGGGGTGAGAGAAAAAGTGGAACTTGCGACCAAATATGGA
aatgatttggatgttgaaagtttggatttttgttgaaagtttggatttttgtcagGCTCTCAAGGATGGGGTGAGAGAAAAAGTGGAACTTGCGACCAAATATGGAATCAGGTATGCAGAGGGGAAAGTAGAGTTTAAGGGAGATCCTGCTTATG
tttttgtc CT-rich tract
atttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgattttgataattccccttttgatattgatattttttaatatttgagttcgtgatttagatatgggaacactggccttgtgatatgggaacactggccttgattcgctgagcttcagagctgtataaatgatttggatgttgaaagtttggatttttgttgaaagtttggatttttgtcagGCTCTCAAGGATGGGGTGAGAGAAAAAGTGGAACTTGCGACCAAATATGGAATCAGGTATGCAGAGGGGAAAGTAGAGTTTAAGGGAGATCCTGCTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC