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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCCCAATGCCAGAGCCTTCTGAGCTCTTTACCAATGTGTATGTGAAGGGATTTGGCACCGAGgtacttcactaattagatattcatattgcaccacgccccttgaaactatagttaatctttcttattgacccatttgttttctgttggcag

Basic information

species Arabidopsis thaliana
transcript AT1G59900.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G59900.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv01s0026g00990.t01 (Vitis vinifera), 5'ss of exon 7
GATTGCCCAATGCCAGAGCCTTCTGAGCTCTTTACCAATGTGTATGTGAAGGGATTTGGCACCGAGgtac--------ttcactaattagatattcatattgcaccacgccccttgaaactatagttaatctttcttattgaccc----atttgttttctgttggcag
||  |  ||||||| ||||||||||| ||||| |||||||| |||||||| || ||||| |  ||||||         | |  ||  | | |  |  | |||  |||      |||   ||     |   ||||||             |   | ||  |  ||    
GAAAGTTCAATGCCGGAGCCTTCTGAACTCTTCACCAATGTATATGTGAAAGGTTTTGGGATTGAGgtaaattttatgtcccttatattggttcttttcttgttccaaattttttgttccttactatgccctttctgggaaggttgaaaacaagcttcttcctgat--

upper sequence: AT1G59900.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv09s0018g01940.t01 (Vitis vinifera), 5'ss of exon 7
GATTGCCCAATGCCAGAGCCTTCTGAGCTCTTTACCAATGTGTATGTGAAGGGATTTGGCACCGAGgta--cttca----ctaattagatattcat--attgcaccacgccccttgaaactatagttaatctttctt------attgacccatttgttttctgttggcag
||  | ||||||||||| |||||||| ||||| ||||| || |||||||| || ||||| |  ||||||   || |    ||  |||   ||||||  |||   ||| | |  |||   || ||      | |||||      |||||   |   ||||     ||    
GAAAGTCCAATGCCAGATCCTTCTGAACTCTTCACCAACGTATATGTGAAAGGTTTTGGGATTGAGgtaaattttatctcctttttattcattcatttatttttccaagtcttttgttcct-taccattcccttcttgggaagattgaaa-acaagtttctacctgat--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164061722|gb|ES117889.1|ES117889
EST:     AGCCTTCTGAGCTCTTTACCAATGTGTATGTGAAGGGATTTGGCACCGAG                         TCATTTGGACCTG
genomic: AGCCTTCTGAGCTCTTTACCAATGTGTATGTGAAGGGATTTGGCACCGAGgtacttcact ... ctgttggcagTCATTTGGACCTG