1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATACCGTACCCGAGATGAGATATCTGGTGTGAGGCAGgttcgttagtctctttacctgaaaaatcatttcttggtcgaggactcagctattgatgaaatctcaaaagtcaaaacatttatgtgctactctatatgactcag
species | Arabidopsis thaliana |
transcript | AT1G59900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCCTGGGAGCACATACCGTACCCGAGATGAGATATCTGGTGTGAGGCAG GAACGGGATCCAATTGAGAGAATEST: gi|164119975|gb|ES155807.1|ES155807
genomic: ATCCTGGGAGCACATACCGTACCCGAGATGAGATATCTGGTGTGAGGCAGgttcgttagt ... tatgactcagGAACGGGATCCAATTGAGAGAAT
EST: TGAGATATCTGGTGTGAGGCAG GAACGGGATACCAATTGAGAGAATAAAGAAGCTGGTACTATCTCATGACCTEST: gi|124740890|gb|EH832052.1|EH832052
genomic: TGAGATATCTGGTGTGAGGCAGgttcgttagt ... tatgactcagGAACGGGAT-CCAATTGAGAGAATAAAGAAGCTGGTACTATCTCATGACCT
EST: TCCTGGGAGCACATACCGTACCCGAGATGAGATATCTAGGTGTGAGGCAG GAACGGGATCCAATTGAEST: gi|124994677|gb|EL066946.1|EL066946
genomic: TCCTGGGAGCACATACCGTACCCGAGATGAGATATCT-GGTGTGAGGCAGgttcgttagt ... tatgactcagGAACGGGATCCAATTGA
EST: CTGGTGTGAGGCAG GAACGGGATCCAATTGAGAGAATAAAGAAGCTGGTACTATCTCATGACCTA
genomic: CTGGTGTGAGGCAGgttcgttagt ... tatgactcagGAACGGGATCCAATTGAGAGAATAAAGAAGCTGGTACTATCTCATGACCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATACCGTACCCGAGATGAGATATCTGGTGTGAGGCAGgttcgttagtctctttacctgaaaaatcatttcttggtcgaggactcagctattgatgaaatctcaaaagtcaaaacatttatgtgctactctatatgactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG