1 5' 3' |
TGTTTATTTGCTTCGTTTCCTCTTCTCTTTCTCCGATTCTTTATCCATCTTCGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTTgtaagctttcttctccctttcaatctcaccaattttggttcttttttttattggtctttgtttggatctgaaagttttgatttttttcctatttgcatta...
species | Arabidopsis thaliana |
transcript | AT1G57680.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTT TTTATGTAGGTEST: gi|164157407|gb|ES048319.1|ES048319
genomic: TCGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTTgtaagctttc ... ttttgtttagTTTATGTAGGT
EST: TCGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTT TT-ATGTAGGTAACACGCATATCAAGTGTTAAAGAGTCAA
genomic: TCGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTTgtaagctttc ... ttttgtttagTTTATGTAGGTAACACGCATATCAAGTGTTAAAGAGTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTATTTGCTTCGTTTCCTCTTCTCTTTCTCCGATTCTTTATCCATCTTCGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTTgtaagctttcttctccctttcaatctcaccaattttggttcttttttttattggtctttgtttggatctgaaagttttgatttttttcctatttgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcacca