Sequence
atgc intronic sequence ATGC exonic sequence...tatgactttttaagatctagggttaagatggtttgataggtctttgtttcaaatttttggtatatttggtaagtttttgattatttgttgttttgtttagTTTATGTAGGTAACACGCATATCAAGTGTTAAAGAGTCAAGATCACAAAAAGTTCTATCGGGTGATCTGGGCTGCTTTCTTTTGTAATCTAATTGCAGAA
Basic information
species | Arabidopsis thaliana |
transcript | AT1G57680.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124926188|gb|EL004072.1|EL004072EST: TCGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTT TTTATGTAGGT
genomic: TCGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTTgtaagctttc ... ttttgtttagTTTATGTAGGT
EST:
gi|164157407|gb|ES048319.1|ES048319EST: TCGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTT TT-ATGTAGGTAACACGCATATCAAGTGTTAAAGAGTCAA
genomic: TCGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTTgtaagctttc ... ttttgtttagTTTATGTAGGTAACACGCATATCAAGTGTTAAAGAGTCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttcaaatttttggtatatttggtaagtttttgattatttgttgttttgtttagTTTATGTAGGTAACACGCATATCAAGTGTTAAAGAGTCAAGATCACAAAAAGTTCTATCGGGTGATCTGGGCTGCTTTCTTTTGTAATCTAATTGCAGAA
ttttgat putative branch site (score: 4)
ttttgttt putative PPT
tttttgattatttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgactttttaagatctagggttaagatggtttgataggtctttgtttcaaatttttggtatatttggtaagtttttgattatttgttgttttgtttagTTTATGTAGGTAACACGCATATCAAGTGTTAAAGAGTCAAGATCACAAAAAGTTCTATCGGGTGATCTGGGCTGCTTTCTTTTGTAATCTAATTGCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - -ggtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - -tttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttttg