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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaacgattcttctcaaaaattttgttcattattattaattatagacaattatatgcattaattatgattttggagtgtagACGGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCTGTGAAGAACACTCTCGGGATGAGTCCGGCTACCAACAGCCCTAGCAGCCCGGCTG

Basic information

species Arabidopsis thaliana
transcript AT1G52680.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077032|gb|DR372789.1|DR372789
EST:     ATCAGAACAATCCTTCCCTAATTTCTCAAGCCTCTAGTGTCATCCAACAG                         ACGGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCTGTGAAG
genomic: ATCAGAACAATCCTTCCCTAATTTCTCAAGCCTCTAGTGTCATCCAACAGgttaacgatt ... tggagtgtagACGGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCTGTGAAG
EST: gi|86023950|gb|DR319703.1|DR319703
EST:     ATCAGAACAATCCTTCCCTAATTTCTCAAGCCTCTAGTGTCATCCAACAG                         ACGGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCTGTGAAG
genomic: ATCAGAACAATCCTTCCCTAATTTCTCAAGCCTCTAGTGTCATCCAACAGgttaacgatt ... tggagtgtagACGGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCTGTGAAG
EST: gi|86023951|gb|DR319704.1|DR319704
EST:     ATCAGAACAATCCTTCCCTAATTTCTCAAGCCTCTAGTGTCATCCAACAG                         ACGGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCTGTGAAG
genomic: ATCAGAACAATCCTTCCCTAATTTCTCAAGCCTCTAGTGTCATCCAACAGgttaacgatt ... tggagtgtagACGGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCTGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattattattaattatagacaattatatgcattaattatgattttggagtgtagACGGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCTGTGAAGAACACTCTCGGGATGAGTCCGGCTACCAACAGCCCTAGCAGCCCGGCTG
     attattaattatagac  TA-rich tract