Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86077032|gb|DR372789.1|DR372789EST: CGAGCCAGCAGTTGAGCCACAGCGCCGGAGAAGTCACCGGTCAAGTTCAG CTGAAGAAGGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAAT
genomic: CGAGCCAGCAGTTGAGCCACAGCGCCGGAGAAGTCACCGGTCAAGTTCAGgtacatacaa ... ttatttatagCTGAAGAAGGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAAT
EST:
gi|86023950|gb|DR319703.1|DR319703EST: CGAGCCAGCAGTTGAGCCACAGCGCCGGAGAAGTCACCGGTCAAGTTCAG CTGAAGAAGGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAAT
genomic: CGAGCCAGCAGTTGAGCCACAGCGCCGGAGAAGTCACCGGTCAAGTTCAGgtacatacaa ... ttatttatagCTGAAGAAGGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAAT
EST:
gi|86023951|gb|DR319704.1|DR319704EST: CGAGCCAGCAGTTGAGCCACAGCGCCGGAGAAGTCACCGGTCAAGTTCAG CTGAAGAAGGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAAT
genomic: CGAGCCAGCAGTTGAGCCACAGCGCCGGAGAAGTCACCGGTCAAGTTCAGgtacatacaa ... ttatttatagCTGAAGAAGGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcgaaatctgatttttgtgatgaatgaaccatcaaatatatgtttatttatagCTGAAGAAGGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAATGCTGATCATCACACCCACTCACAGTCACAGTTACACTCAGAGCATGATC
atctgat putative branch site (score: 4)
tttattt putative PPT
atcaaatatatgttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacatacaacacacaaaatagcgacatttgttttgcttatatgatctgaaatttgacaattttcgaaatctgatttttgtgatgaatgaaccatcaaatatatgtttatttatagCTGAAGAAGGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAATGCTGATCATCACACCCACTCACAGTCACAGTTACACTCAGAGCATGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA