1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAATGTCAAACCAAGAGCTTGTCGATGCTGGAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAGgtaagttacagaaagaagtatatctcactcagtctttgatgctatgtctctagtaacatccagtgtttctttccag
species | Arabidopsis thaliana |
transcript | AT1G48240.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAG GTTGTGCATCAGACACTCGAAGTTGGCEST: gi|124822471|gb|EH907337.1|EH907337
genomic: GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAGgtaagttaca ... ttctttccagGTTGTGCATCAGACACTCGAAGTTGGC
EST: GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAG GTTGTGCATCAGACACTCGAAGTTGGEST: gi|125034636|gb|EL106905.1|EL106905
genomic: GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAGgtaagttaca ... ttctttccagGTTGTGCATCAGACACTCGAAGTTGG
EST: GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAG GTTGTGCATCAGAACACTCGAAGTTGGCACTCAAACTGCATCTAACT
genomic: GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAGgtaagttaca ... ttctttccagGTTGTGCATCAGA-CACTCGAAGTTGGCACTCAAACTGCATCTAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGTCAAACCAAGAGCTTGTCGATGCTGGAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAGgtaagttacagaaagaagtatatctcactcagtctttgatgctatgtctctagtaacatccagtgtttctttccag
- - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - GATGGA