Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttacagaaagaagtatatctcactcagtctttgatgctatgtctctagtaacatccagtgtttctttccagGTTGTGCATCAGACACTCGAAGTTGGCACTCAAACTGCATCTAACTTAAAGGGACAG

Basic information

species Arabidopsis thaliana
transcript AT1G48240.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164092958|gb|ES003183.1|ES003183
EST:     GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAG                         GTTGTGCATCAGACACTCGAAGTTGGC
genomic: GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAGgtaagttaca ... ttctttccagGTTGTGCATCAGACACTCGAAGTTGGC
EST: gi|124822471|gb|EH907337.1|EH907337
EST:     GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAG                         GTTGTGCATCAGACACTCGAAGTTGG
genomic: GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAGgtaagttaca ... ttctttccagGTTGTGCATCAGACACTCGAAGTTGG
EST: gi|125034636|gb|EL106905.1|EL106905
EST:     GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAG                         GTTGTGCATCAGAACACTCGAAGTTGGCACTCAAACTGCATCTAACT
genomic: GAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAGgtaagttaca ... ttctttccagGTTGTGCATCAGA-CACTCGAAGTTGGCACTCAAACTGCATCTAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctcactcagtctttgatgctatgtctctagtaacatccagtgtttctttccagGTTGTGCATCAGACACTCGAAGTTGGCACTCAAACTGCATCTAACTTAAAGGGACAG
                             tagtaac  putative branch site (score: 1)
                                          tgtttctttcc  putative PPT
                                            tttcttt  TA-rich tract