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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatctaattcgcgctggctcggcttattgtttgtcctttttatggaaatgtgaaatctttgtgtgtttttggtggtgaagGGAAAGCAGCAGGGCAATCATCAAGGCTTCTTGAGTTCGACGACTTCGAGGAAATTGATTCGACATAAGTCTATCTTCCATACCTTATTTACGTTTCTTC

Basic information

species Arabidopsis thaliana
transcript AT1G44000.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124975917|gb|EL049374.1|EL049374
EST:     AAGTACAATCGGATCGAGTGTTTGGGGTACCTCTTAAGGATGCTGCGAAG                         GGAAAGCAGCAGGGCAATCATCAAGGCTTCTTGAGTTCGACGACTTCG
genomic: AAGTACAATCGGATCGAGTG-TTGGGG-ACCTCTTAAGGATGCTGCGAAGgtatgatcta ... ggtggtgaagGGAAAGCAGCAGGGCAATCATCAAGGCTTCTTGAGTTCGACGACTTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtttgtcctttttatggaaatgtgaaatctttgtgtgtttttggtggtgaagGGAAAGCAGCAGGGCAATCATCAAGGCTTCTTGAGTTCGACGACTTCGAGGAAATTGATTCGACATAAGTCTATCTTCCATACCTTATTTACGTTTCTTC
           tttttat  TA-rich tract