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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTATCAATAGAGGATCCCCAAGAACAGATAAGCGCTCTACAAGATGCTTTTACCCCTGGGGACGAGCTCGAAGGGACTGATGTAGACTACTTATACACgtaagaatgagaaaactagacctggtcatcttatatatacacatttatgtagatatggaaccttaaggtgtgtgtacaaatggaaactctgtag

Basic information

species Arabidopsis thaliana
transcript AT1G36320.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125125883|gb|EL171318.1|EL171318
EST:     TGGGGACGAGCTCGAAGGGACTGATGTAGACTACTTATACAC                         GACGCCTGAGCATTTGCAGAGCTTGATGAAAACGGTGTT
genomic: TGGGGACGAGCTCGAAGGGACTGATGTAGACTACTTATACACgtaagaatga ... aactctgtagGACGCCTGAGCATTTGCAGAGCTTGATGAAAACGGTGTT
EST: gi|124776439|gb|EH866566.1|EH866566
EST:     AGACTACTTATACAC                         GACGCCTGAGCATTTGCAGAGCTTGATGAAAACGGTGTTGGAAGCGTATCA
genomic: AGACTACTTATACACgtaagaatga ... aactctgtagGACGCCTGAGCATTTGCAGAGCTTGATGAAAACGGTGTTGGAAGCGTATCA