1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaaactttatatgccctgtcagtgaaataagttaagggattgaacaatactgatattgttcaatgataacttttcttattggtaagCTCTTGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACACTTCAACAGAAAGCATTGATGCGCTAAATGCTGCGGAAATGAAGCTTCA
species | Arabidopsis thaliana |
transcript | AT1G36320.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCTACTATGACAATCCGGATGAGCAAAATG CTCTTGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACAEST: gi|125068625|gb|EL134690.1|EL134690
genomic: TCCTACTATGACAATCCGGATGAGCAAAATGgtaaaacttt ... tattggtaagCTCTTGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACA
EST: CAATCCGGATGAGCAAAATG CTCTTGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACAEST: gi|124885382|gb|EH964284.1|EH964284
genomic: CAATCCGGATGAGCAAAATGgtaaaacttt ... tattggtaagCTCTTGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACA
EST: GAATCCTATTATGACAATCCGGATGAGCAAAATG CTCTTGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACA
genomic: GAATCCTACTATGACAATCCGGATGAGCAAAATGgtaaaacttt ... tattggtaagCTCTTGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACA
ttaagggattgaacaatactgatattgttcaatgataacttttcttattggtaagCTCTTGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACACTTCAACAGAAAGCATTGATGCGCTAAATGCTGCGGAAATGAAGCTTCA
tgataac putative branch site (score: 2)
cttttcttatt CT-rich tract
ataacttttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaactttatatgccctgtcagtgaaataagttaagggattgaacaatactgatattgttcaatgataacttttcttattggtaagCTCTTGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACACTTCAACAGAAAGCATTGATGCGCTAAATGCTGCGGAAATGAAGCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC