1 5' 3' | 2 5' 3' | 3 5' 3' |
...agacgttgatacgagaaatttctaaatctgtctaaactttttccaatattattgcgagagacctaagtaataataataaaaaaaaaaaaaaactgtgtagGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGTGGGTGGACCTTACCTAGTTTACGTAACAATATCAGCCGATAATCCCATTCTCATCAAG
species | Arabidopsis thaliana |
transcript | AT1G35180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTTAAAGAGATTGGTTATAGAGACACCGACCTAAATCTTGCAGCCGAT GTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGTGGGTGGACCTTACEST: gi|19875749|gb|AU236580.1|AU236580
genomic: TTCTTAAAGAGATTGGTTATAGAGACACCGACCTAAATCTTGCAGCCGATgtgagtactt ... aactgtgtagGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGTGGGTGGACCTTAC
EST: TTCTTAAAGAGATTGGTTATAGAGACACCGACCTAAATCTTGCAGCCGAT GTGTGGTTTGCAACAATTTTCTCGTTGGCCAGAATGGNGGGTGGACCTTACEST: gi|19742179|gb|AU227532.1|AU227532
genomic: TTCTTAAAGAGATTGGTTATAGAGACACCGACCTAAATCTTGCAGCCGATgtgagtactt ... aactgtgtagGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGTGGGTGGACCTTAC
EST: TTCTTAAAGAGATTGGTTATAGAGACACCGACCTAAATCTTGCAGCCGAT GTGTGTTTTGCAACAATTTTCTCCTTGGCCAGAATGGTGGGTGGACCTTAC
genomic: TTCTTAAAGAGATTGGTTATAGAGACACCGACCTAAATCTTGCAGCCGATgtgagtactt ... aactgtgtagGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGTGGGTGGACCTTAC
atattattgcgagagacctaagtaataataataaaaaaaaaaaaaaactgtgtagGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGTGGGTGGACCTTACCTAGTTTACGTAACAATATCAGCCGATAATCCCATTCTCATCAAG
taagtaataataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agacgttgatacgagaaatttctaaatctgtctaaactttttccaatattattgcgagagacctaagtaataataataaaaaaaaaaaaaaactgtgtagGTGTGTTTTGCAACAATTTTCTCGTTGGCCAGAATGGTGGGTGGACCTTACCTAGTTTACGTAACAATATCAGCCGATAATCCCATTCTCATCAAG
- - - - - -cgagaaa
- - - - - - - - - - -ctaaatc
- - - - - - - - - - - - - - - -ctaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa