1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacatattttccccctcttttatgtcgtttttaatggtaacttgtagtcttgtagattatgtactatgaaaagttggatcttaagtaactaaataaacttattttttgttgtgaatatatggtggatttaaagTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGAGATCTCAAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAGAGATTGGTTATAGAGACACCG
species | Arabidopsis thaliana |
transcript | AT1G35180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCATTCTGTTTGCATTCTTGGTTTTGTAGCTGGACTTTTCTACCAAAAG TGTGGATCCGAGATGGTGGCAGCAATATGGATAACAGAGATCTCAAGTCCGEST: gi|19875749|gb|AU236580.1|AU236580
genomic: ATCATTCTGTTTGCATTCTTGGTTTTGTAGCTGGACTTTTCTACCAAAAGgtacatattt ... ggatttaaagTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGAGATCTCAAGTCCG
EST: ATCATTCTGTTTGCATTCTTGGTTTTGTAGCTGGACTTTTCTACCAAAAG TGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGAGATCTCAAGTCCGEST: gi|19742179|gb|AU227532.1|AU227532
genomic: ATCATTCTGTTTGCATTCTTGGTTTTGTAGCTGGACTTTTCTACCAAAAGgtacatattt ... ggatttaaagTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGAGATCTCAAGTCCG
EST: TTTGCATTCTTGGTTTTGTAGCTGGACTTTTGTACCAAAAG TGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGAGATCTCAAGTCCG
genomic: TTTGCATTCTTGGTTTTGTAGCTGGACTTTTCTACCAAAAGgtacatattt ... ggatttaaagTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGAGATCTCAAGTCCG
tcttaagtaactaaataaacttattttttgttgtgaatatatggtggatttaaagTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGAGATCTCAAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAGAGATTGGTTATAGAGACACCG
aactaaa putative branch site (score: 2)
taactaaataaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatattttccccctcttttatgtcgtttttaatggtaacttgtagtcttgtagattatgtactatgaaaagttggatcttaagtaactaaataaacttattttttgttgtgaatatatggtggatttaaagTGTGGATCCGAGATGGTGGCAGCACTTTGGATAACAGAGATCTCAAGTCCGTTTCTTCACCTCAGGGAGATTCTTAAAGAGATTGGTTATAGAGACACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA