1 5' 3' | 2 5' 3' | 3 5' 3' |
...aacaattttatttaatgtgttagcatatctatcacatttaataaatataaatacggatgaaactatactctttttaaaaaaaaaaatgtgaacactctagGCGGCTCCGGTATATCTATCGGAAGTAGCACCACCGCGATGGCGTGGAGCATTCAACATCGGCTTTTCATGCTTCATCAGTATGGGAGTAGTAGCAGCCA
species | Arabidopsis thaliana |
transcript | AT1G34580.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCATCTCCGGTCGGATTTTGCTAGGATTTGGTGTCGGTTTCACCAACCAG GCGGCTCCGGTATATCTATCGGAAGTAGCACCACCGCGATGGCGTGGAGCA
genomic: TCATCTCCGGTCGGATTTTGCTAGGATTTGGTGTCGGTTTCACCAACCAGgtagctatat ... aacactctagGCGGCTCCGGTATATCTATCGGAAGTAGCACCACCGCGATGGCGTGGAGCA
tataaatacggatgaaactatactctttttaaaaaaaaaaatgtgaacactctagGCGGCTCCGGTATATCTATCGGAAGTAGCACCACCGCGATGGCGTGGAGCATTCAACATCGGCTTTTCATGCTTCATCAGTATGGGAGTAGTAGCAGCCA
atgaaactatactctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaattttatttaatgtgttagcatatctatcacatttaataaatataaatacggatgaaactatactctttttaaaaaaaaaaatgtgaacactctagGCGGCTCCGGTATATCTATCGGAAGTAGCACCACCGCGATGGCGTGGAGCATTCAACATCGGCTTTTCATGCTTCATCAGTATGGGAGTAGTAGCAGCCA
- - - - - - - - - - - - - - -tatcaca
- - - - - - - - - - - - - - - - - - - -aataaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa