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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacaaattcaagaacataaaaggatcattttattaaacaagtatattagttaatttatctttgattataatttaacaaagGGGGTGTGACGACTATGAAGCCGTTTCTTGAGAAATTCTTTCCATCGGTTCTTAAAAAAGCTTCGGAAGCTAAGACGAATGTCTACTGCGTCTACGACAG

Basic information

species Arabidopsis thaliana
transcript AT1G34580.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878545|gb|AU239376.1|AU239376
EST:     TGTGGCTGCCTCATGTGGTCTCATTTTTGGCTATGACATCGGAATCTCAG                         GGGGTGTGACGACTATGAAGCCGTTTCTTGAGAAATTCTTTCCATCGGTTC
genomic: TGTGGCTGCCTCATGTGGTCTCATTTTTGGCTATGACATCGGAATCTCAGgttacaaatt ... tttaacaaagGGGGTGTGACGACTATGAAGCCGTTTCTTGAGAAATTCTTTCCATCGGTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttattaaacaagtatattagttaatttatctttgattataatttaacaaagGGGGTGTGACGACTATGAAGCCGTTTCTTGAGAAATTCTTTCCATCGGTTCTTAAAAAAGCTTCGGAAGCTAAGACGAATGTCTACTGCGTCTACGACAG
                                            atttaac  putative branch site (score: 3)
                tatattagttaattta  TA-rich tract