1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGTTGGGCTTGATTTGGAAGAACTCAGGCAACTCCAGAACATCGCCAAGAGACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAGgtaccaaatcccccttttacccttttctcgccataatcgtttccttacaatggttaggctataagtagtagttgctcttatctgaaatggaacattagtt...
species | Arabidopsis thaliana |
transcript | AT1G30070.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAG CTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACAEST: gi|125219668|gb|EL233753.1|EL233753
genomic: GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAGgtaccaaatc ... cttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
EST: TCAATTCCGAGATTTCAAACTTGGAGAAG CTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACAEST: gi|86054530|gb|DR350287.1|DR350287
genomic: TCAATTCCGAGATTTCAAACTTGGAGAAGgtaccaaatc ... cttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
EST: GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAG CTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
genomic: GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAGgtaccaaatc ... cttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGGGCTTGATTTGGAAGAACTCAGGCAACTCCAGAACATCGCCAAGAGACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAGgtaccaaatcccccttttacccttttctcgccataatcgtttccttacaatggttaggctataagtagtagttgctcttatctgaaatggaacattagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcgtttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatggaa