1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttgagttctgtgactgaaattattataaacttatctcttggattgaggttaaaaaggactacttttgatttttaattagcatgaatcttcttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACAGTTCCTGCACCGGTTTCTTCTTCGGGTAAGCCGGTTTCTTCTTCGGCAT
species | Arabidopsis thaliana |
transcript | AT1G30070.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAG CTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACAEST: gi|125219668|gb|EL233753.1|EL233753
genomic: GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAGgtaccaaatc ... cttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
EST: TCAATTCCGAGATTTCAAACTTGGAGAAG CTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACAEST: gi|86054530|gb|DR350287.1|DR350287
genomic: TCAATTCCGAGATTTCAAACTTGGAGAAGgtaccaaatc ... cttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
EST: GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAG CTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
genomic: GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAGgtaccaaatc ... cttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
gaggttaaaaaggactacttttgatttttaattagcatgaatcttcttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACAGTTCCTGCACCGGTTTCTTCTTCGGGTAAGCCGGTTTCTTCTTCGGCAT
ttttaat putative branch site (score: 3)
tcttcttgct putative PPT
actacttttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgagttctgtgactgaaattattataaacttatctcttggattgaggttaaaaaggactacttttgatttttaattagcatgaatcttcttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACAGTTCCTGCACCGGTTTCTTCTTCGGGTAAGCCGGTTTCTTCTTCGGCAT
- - - - - - - ctgaaat
- - - - - - - - - - - - - -aaactta
- - - - - - - - - - - - - - - - - - - - - - - - - taaaaag