1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgctttcgtttgtttcaaatttgcaatcttgttgtttcttctgacttgcatgggtgatttagttttctttgttgtttcagtcattgttagctgtgtcattttgttttgcttaagcagGGTGGTACTCTGGGGTCTTTCTCATCAGATATTTGTCGGCTGCTGCAGCTCTGTGATGAGGAAGATGATGCTACCAGCAAATTAGCTGCCCCCAAGCCCG
species | Arabidopsis thaliana |
transcript | AT1G28520.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTGGAGATCTGAGCTCAATGAGCCTTCTCCAGCTTCATCCTTGCAACAA GGTGGTACTCTGGGGTCTTTCTCATCAGATATTTGTCGGCTGCTGCAGCTCEST: gi|124939005|gb|EL015583.1|EL015583
genomic: AGTGGAAATCTGAGCTCAATGAGCCTTCTCCAGCTTCATCCTTGCAACAAgtatgctttc ... gcttaagcagGGTGGTACTCTGGGGTCTTTCTCATCAGATATTTGTCGGCTGCTGCAGCTC
EST: TCTGAGCTCAATGAGCCTTCTCCAGCTTCATCCTTGCAACAA GGTGGTACTCTGGGGTCTTTCTCATCAGATATTTGTCGGCTGCTGCAG
genomic: TCTGAGCTCAATGAGCCTTCTCCAGCTTCATCCTTGCAACAAgtatgctttc ... gcttaagcagGGTGGTACTCTGGGGTCTTTCTCATCAGATATTTGTCGGCTGCTGCAG
ttttctttgttgtttcagtcattgttagctgtgtcattttgttttgcttaagcagGGTGGTACTCTGGGGTCTTTCTCATCAGATATTTGTCGGCTGCTGCAGCTCTGTGATGAGGAAGATGATGCTACCAGCAAATTAGCTGCCCCCAAGCCCG
ttttgctt CT-rich tract
attttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttcgtttgtttcaaatttgcaatcttgttgtttcttctgacttgcatgggtgatttagttttctttgttgtttcagtcattgttagctgtgtcattttgttttgcttaagcagGGTGGTACTCTGGGGTCTTTCTCATCAGATATTTGTCGGCTGCTGCAGCTCTGTGATGAGGAAGATGATGCTACCAGCAAATTAGCTGCCCCCAAGCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC