1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatctaagcatgtaccaatgattcatgagtgatcatgtttgttataggagcagaactgatgtgaagtgtgtattttgaatgtgtttttggttttgtacagAGAATCTTGTGTTTTTGTGGTGGGGAGGTGAGATTTCTTATGACGGGGAAGCGATCAAAGACTAATTGCAGATCTGCTTCTCACAAGCTCTTCAAGGATA
species | Arabidopsis thaliana |
transcript | AT1G28520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGATTTTTCTCTTTGCCTTTGTTATTTGCTGCTTTTGCTGCAGCTACAGT AGAATCTTGTGTTTTTGTGGTGGGGAGGTGAGATTTCTTATGACGGGGAAG
genomic: AGATTTTTCTCTTTGCCTTTGTTATTTGCTGCTTTTGCTGCAGCTACAGTgtaagtttga ... ttttgtacagAGAATCTTGTGTTTTTGTGGTGGGGAGGTGAGATTTCTTATGACGGGGAAG
aggagcagaactgatgtgaagtgtgtattttgaatgtgtttttggttttgtacagAGAATCTTGTGTTTTTGTGGTGGGGAGGTGAGATTTCTTATGACGGGGAAGCGATCAAAGACTAATTGCAGATCTGCTTCTCACAAGCTCTTCAAGGATA
aactgat putative branch site (score: 3)
tattttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctaagcatgtaccaatgattcatgagtgatcatgtttgttataggagcagaactgatgtgaagtgtgtattttgaatgtgtttttggttttgtacagAGAATCTTGTGTTTTTGTGGTGGGGAGGTGAGATTTCTTATGACGGGGAAGCGATCAAAGACTAATTGCAGATCTGCTTCTCACAAGCTCTTCAAGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
aatctaa
- - - - - -gtaccaa
- - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - agcagaa