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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatttcaaacttctacttcaaatatcccacactcgcatagatacacaccgagcaggtttttcctaaattctaattacgtaacttatgcgtctggtatttgacaaagGTGGCGGTTGCGGGGTGGGTTTGGGCCTCGGGTGGGGTTTCGGGACTGCGTTTGGGAGTCACTATCGTTCATCTAGACTTACATTTCAAGGCATCGAGTT

Basic information

species Arabidopsis thaliana
transcript AT1G27695.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116459310|gb|EG501902.1|EG501902
EST:     GAATGCCTATGAACATCTTAGGTGTTGGTGCTG                         GTGGCGGTTGCGG
genomic: GAATGCCTATGAACATCTTAGGTGTTGGTGCTGgtaagcattt ... tttgacaaagGTGGCGGTTGCGG
EST: gi|125260722|gb|EL274807.1|EL274807
EST:     AATGCCTATGAACATCTTAGGTGTTGGTGCTG                         GTGGCGGTTGCGGGGTGGGTTTGGGCCTCGGGTGGGGTTTCGGGACTGCGT
genomic: AATGCCTATGAACATCTTAGGTGTTGGTGCTGgtaagcattt ... tttgacaaagGTGGCGGTTGCGGGGTGGGTTTGGGCCTCGGGTGGGGTTTCGGGACTGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaggtttttcctaaattctaattacgtaacttatgcgtctggtatttgacaaagGTGGCGGTTGCGGGGTGGGTTTGGGCCTCGGGTGGGGTTTCGGGACTGCGTTTGGGAGTCACTATCGTTCATCTAGACTTACATTTCAAGGCATCGAGTT
            taaattctaatta  TA-rich tract