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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcatcgggtaattcagattcgcaatttctgctcatttgaatttatagattcctaaattggtttctttttttttcttgtgaagATCACTATGGTGCTCTCTGACTTCACTGGAGTCGGTGTTGGATTTG

Basic information

species Arabidopsis thaliana
transcript AT1G27695.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116459310|gb|EG501902.1|EG501902
EST:     AGGTAGAGAGAGCAATCTACCAGATTCACCGATTACCAACAACAAACAAG                         ATCACTATGGTGCTCTCTGACTTCACTGGAGTCGGTGTTGGATTTG
genomic: AGGTAGAGAGAGCAATCTACCAGATTCACCGATTACCAACAACAAACAAGgtatcatcgg ... tcttgtgaagATCACTATGGTGCTCTCTGACTTCACTGGAGTCGGTGTTGGATTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctcatttgaatttatagattcctaaattggtttctttttttttcttgtgaagATCACTATGGTGCTCTCTGACTTCACTGGAGTCGGTGTTGGATTTG
                      tcctaaa  putative branch site (score: 2)
                             ttggtttctttttttt  CT-rich tract
                         taaattggtttctttt  TA-rich tract