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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAACTAGATGATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatgcacttgtttgcccttgcgttcatatacatttattttgctcttcttttaataacgatttgtgcaacttcgaatgttcag

Basic information

species Arabidopsis thaliana
transcript AT1G27110.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428740|gb|EG471332.1|EG471332
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116378181|gb|EG420773.1|EG420773
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428736|gb|EG471328.1|EG471328
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428741|gb|EG471333.1|EG471333
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTT-GATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428746|gb|EG471338.1|EG471338
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428724|gb|EG471316.1|EG471316
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116378186|gb|EG420778.1|EG420778
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428723|gb|EG471315.1|EG471315
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428730|gb|EG471322.1|EG471322
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116378182|gb|EG420774.1|EG420774
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428726|gb|EG471318.1|EG471318
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428732|gb|EG471324.1|EG471324
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428743|gb|EG471335.1|EG471335
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428737|gb|EG471329.1|EG471329
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428727|gb|EG471319.1|EG471319
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428729|gb|EG471321.1|EG471321
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428721|gb|EG471313.1|EG471313
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428745|gb|EG471337.1|EG471337
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428731|gb|EG471323.1|EG471323
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
EST: gi|116428725|gb|EG471317.1|EG471317
EST:     ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAA                         GCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG
genomic: ATGGGTTTCAGGACAGACTAGAGAAACTGGCAGACTCTTTGACTGATAAAgtaagtgatg ... gaatgttcagGCAATGTGGTATCAAGACTGGCTTTTTGATATTACGACAATTTGGGCATTG