1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gcataaattactctctctcttttttggtcaacaaatattagtctgttctgtttcgattagactcacgcgtgaactctgtttcgtaatctccgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG
species | Arabidopsis thaliana |
transcript | AT1G27110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG AAAGAAGAAAGCAGATTTGTTAACTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116452156|gb|EG494748.1|EG494748
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116452140|gb|EG494732.1|EG494732
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116452146|gb|EG494738.1|EG494738
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116423249|gb|EG465841.1|EG465841
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCA-- ATAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116452138|gb|EG494730.1|EG494730
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116423251|gb|EG465843.1|EG465843
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116452152|gb|EG494744.1|EG494744
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116423246|gb|EG465838.1|EG465838
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: GAGGCCTCGTGTACCATGTCATTGAAATGCATG AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116423245|gb|EG465837.1|EG465837
genomic: GAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116452135|gb|EG494727.1|EG494727
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG AAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116423247|gb|EG465839.1|EG465839
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCA-- ATAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAEST: gi|116423242|gb|EG465834.1|EG465834
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
EST: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATG AAAGAAGAAAGCAGATTTGTTAACTGTGGTTATGAGGTCAACACCTCTTCA
genomic: TTCGGGATTGAACAATGGAGGCCTCGTGTACCATGTCATTGAAATGCATGgtaagttatc ... cgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCA
ttctgtttcgattagactcacgcgtgaactctgtttcgtaatctccgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG
gactcac putative branch site (score: 2)
tctcc putative PPT
ataaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcataaattactctctctcttttttggtcaacaaatattagtctgttctgtttcgattagactcacgcgtgaactctgtttcgtaatctccgataaacagAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG