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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGGTGGCAGTAACAGCTCAGCTCCTAATATGCAGCTATCACAGCCATCATCGGGGGCTATGCAGACTTCACAATCCAAATATGTGAAAGTCTGGGAGgtaatgtcagtttatcttgtctaaaataacggtgatcttgtgctaacttttacttacattttcaaattcatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G25540.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25540.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G10880.1 (Glycine max), 5'ss of exon 9
--ACTTGGTGGCAGTAACAGCTCAGCTCCTAATATGCAGCTATCACAGCCATCATCGGGGGCTATGCAGACTTCACAATCCAAATATGTGAAAGTCTGGGAGgtaatgtcagtttatcttgtctaaaataacggtgatcttgtg-ctaacttttactt-acattttcaaattcatgcag-----------------------
  |     | |    ||||   | ||  |||||||||   | ||||| |   |||| || | ||||||  |  ||||||||||||||||||| ||||||||||||   ||| ||  || | |       |  |  | ||   || | ||||| |  || ||||  ||    |  |                           
GCAACCACTTGTG--AACAATGCCGCAGCTAATATGCCTTTGTCACAACAGACATCAGGTGGTATGCAATCGGCACAATCCAAATATGTGAAGGTCTGGGAGgtatgttcacttcctcctatagcctgcattgaagttcacctgtcaaacttctgttttacatcatcgtccttttcttttctcttgaaaatttcagtctgtt