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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCAGTCATCCAGTTGCCATCACAGACGCTTCTTCTCTCTGTCTCTGACAAGGCTTGCCGCTTGATTGGAATGCTTTTCCCAGGGgtaaggaagtactaagtttaaggtgtctatatatgttttgcttcacattagtgactcttgagggttgttttgtttactcctag

Basic information

species Arabidopsis thaliana
transcript AT1G25540.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25540.2 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA02G10880.1 (Glycine max), 5'ss of exon 14
TGTGCAGTCATCCAGTTGCCATCACAGACGCTTCTTCTCTCTGTCTCTGACAAGGCTTGCCGCTTGATTGGAATGCTTTTCCCAGGGgtaaggaagtactaagtttaaggtgtctatatatgttttgcttcacattagtgactcttgagggttgttttgtttactcctag-----------
|||||||| || || || |||||||||||| | || || ||||| |||||||| || | |||||||||||| |||||||| || |||||||        |   |||   |  |||||     || ||  ||| ||||   ||  |      || |||  |  |  ||| |           
TGTGCAGTTATTCAATTACCATCACAGACGTTGCTACTATCTGTTTCTGACAAAGCCTTCCGCTTGATTGGGATGCTTTTTCCTGGGgtaacatttagttgctttttgaggttctattataattatggatca-attat--accttgcctatttatttactcgaagccttgaatgctagcag