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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGATGTCAACGCCAAATGGGACGCTTGTCTCGATCTCACTGCTCGTCGCTTTGTCTACTCTTCCCTCGGCGGCGCTTTCGCCGGTCTTCTCTTCTTCAgttcggtgttttccaatatcccccactttattcttatgattcaattccgttcacatagtgttgattactgattaggtttctgggtagagaaactgagaat...

Basic information

species Arabidopsis thaliana
transcript AT1G22520.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22520.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv18s0041g00360.t01 (Vitis vinifera), 5'ss of exon 1
TCCGATGTCAACGCCAAATGGGACGCTTGTCTCGATCTCACTGCTCGTCGCTTTGTCTACTCTTCCCTCGGCGGCGCTTTCGCCGGTCTTCTCTTCTTCAgttcggtgttttccaatatcccccactttattcttatgattcaattccgttcacatagtgttgattactgattaggtttctgggtagagaaactgagaat-----
| |||| |  | |||||||||||||| ||||| |||||||| |  || ||||| |||||||||||| |||  |||||||| | ||| || ||| ||||||||  |   | ||||  | |       ||||||| | |  | | ||||  |   |||  | ||| || |   | |  |||  |  |   |     |   ||     
TACGATCTGGATGCCAAATGGGACGCCTGTCTTGATCTCACCGTCCGCCGCTTCGTCTACTCTTCCTTCGCGGGCGCTTTTGGCGGCCTCCTCCTCTTCAgtcagtcttcttcctcttttattttttttattcatct--tcctattcatt---catcattttggtttcctgtaaaattttggatttttgttttcgcacattttct