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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagggttttgagtgttgttccgatttgaatcatttaggatttattaggtttaaatggttttttgtgttttgacgattaattgttgcgttgtgtgccctagGGAGTCCGGTTACGAGATGGGCGTCGATTGCTTTTGGTGCTGGAATTGGTATTGGTTCTGCATACACAGATTGTTCTCGTGTTTTTGATGCGTCTTCTTC

Basic information

species Arabidopsis thaliana
transcript AT1G22520.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22520.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA06G48350.2 (Glycine max), 3'ss of exon 1
--tagggttttgagtgttgttccgatttgaatcatttaggatttattaggtttaaatggttttttgtgtt-ttgacgattaattgttgcgttgtgtgccctagGGAGTCCGGTTACGAGATGGGCGTCGATTGCTTTTGGTGCTGGAATTGGTATTGGTTCTGCATACACAGATTGTTCTCGTGTTTTTGATGCGTCTTCTTC
  |   |  |||  |    |   || ||||||| |||  | || ||        ||   || ||  | || ||||   |      ||  | |   ||  ||||||||||| || ||  ||||||| || |||||||||||||||||| |||| ||||| ||||||||  |||| ||||||||| | || ||||   || |  |
atttttgcattgcattgattgaggacttgaatc-tttgtggttgatacctccccaa--attgttaatattattgattttctccaattctgattgttgtactagGGAGTCCTGTGACTCGATGGGCATCTATTGCTTTTGGTGCTGGAGTTGGAATTGGATCTGCATATGCAGAATGTTCTCGTCTGTTCGATGGACCTCCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtttaaatggttttttgtgttttgacgattaattgttgcgttgtgtgccctagGGAGTCCGGTTACGAGATGGGCGTCGATTGCTTTTGGTGCTGGAATTGGTATTGGTTCTGCATACACAGATTGTTCTCGTGTTTTTGATGCGTCTTCTTC
                            gattaat  putative branch site (score: 3)
                             attaattgtt  TA-rich tract