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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCGAGAAACCGCTCATGTGTTACAAGAACATTACCCTGAACGCTTAGGCTTGGCCATTGTATACAACCCGCCTAAGATTTTTGAGTCGTTTTATAAGgtacatttcaaaatctctctatatgcaagtccttatgcatcatgaagctttttgacataagaggaaattgtttaatatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G22180.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125187302|gb|EL202256.1|EL202256
EST:     ATTGTATACAACCCGCCTAAGATTTTTGAGTCGTTTTATAAG                         ATGGTGAAACCATTTTTAGAGCCAAAGACCAGCAACAAGGTGAAATTTGTC
genomic: ATTGTATACAACCCGCCTAAGATTTTTGAGTCGTTTTATAAGgtacatttca ... taatatgcagATGGTGAAACCATTTTTAGAGCCAAAGACCAGCAACAAGGTGAAATTTGTC
EST: gi|86083115|gb|DR378874.1|DR378874
EST:     GCTTGGCCATTGTATACAACCCGCCTAAGATTTTTGAGTCGTTTTATAAG                         ATGGTGAAACCATTTTTAGAGCCAAAGACCAGCAACAAGGTGAAATTTGTC
genomic: GCTTGGCCATTGTATACAACCCGCCTAAGATTTTTGAGTCGTTTTATAAGgtacatttca ... taatatgcagATGGTGAAACCATTTTTAGAGCCAAAGACCAGCAACAAGGTGAAATTTGTC